Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02414 ATGCATAATCCTAAATCTGCAGCTTCTTTCCTCATAGCACGTGCCAAGTCACTTCAACTTCGCCACCACTACCATTATCGCTCTGTTACTTCAATTTCACGCTCATTCTTATTCAAATTTCAACCGTCGCTTTCTTCTCCGTTAATCTTCACGCGCTTCTTCTCTGGATATTACAACCTCGAACAGTTCTCTGATGATGAATATGAATGTGATTTTGAGAACCACCAGGCATCATCTACGGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGTATGCTATTACGGAATGAAAAGGATCAGGAGATTGTATCTAGAGACAAAAGAGATAGGAGAGACTATGAACAAATAGCTAACCTTGCAAAAAGAATGGGACTTTACAGTGAGCTGTTCGGAAAAGTGGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGACCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCATTAAGCTTGCAAAGGAGAGTGGAGGGTTTAATACAAGAATACCTTGATAGACTACAATTAAATTCTGAGAAGACAGCTGACTGTCTGGATAATGTGAAGTCCACCAATCAGATTAAAGAAATAGACATGGACGAAAATGCCAATTTTTGTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCTGAAGGCAAGAAGATGCTGGAATTTCGGAAGTCTCTACCAGCATATAGAGAGAAGGAAGGTTTACTTCAAGCTATAGCACGTAATCAGGTAATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACTACTCAACTTCCTCAATATGTATTAGAGTCAGAGATTGAGTCTGGCCGTGGGGCATTTTGCAGCATTATTTGCACACAGCCTCGTAGAATATCTGCTATGGCAGTGTCTGAGAGAGTGTCAGCAGAGAGAGGGGAGTCTCTCGGTGAAACAGTGGGTTTCAAAGTTCGGTTAGAAGGAATGAGAGGGAAAAACACCCATCTGCTATTTTGTACTAGTGGTATATTACTCCGAAGGTTGCTGAGTGATCGGAACCTGAGTGGTATAACCCATGTGTTTGTGGATGAAATTCACGAGCGAGGGATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTTCTTCCACGTCGTCGAGATTTAAGATTGGTATTAATGAGTGCCACTTTGAATGCTGAGCTTTTTTCAAATTATTTTGGAGGTGCACCAACATTTCATATCCCGGGTTTCACCTATCCGGTAAGATCCCACTTTTTAGAAGATGTTTTGGAAATGACTGGATATAAGTTGTCTTCTTTCAACCAAGTTGATGATTATGGTCAAGAGAAATTGTGGAAAACACAAAAGCAACTTGCACCACGAAAGAGGAAAAACCAGATCACTTCTCTTGTTGAGGATGCTCTTTCTAAATCAAGCTTTGAGAACTATAGTCCCAGGACACGTGATTCGCTATCTTCTTGGACACCTGACTGCATAGGATTTAATCTCATTGAAGCTGTTCTATGCCATATATGTCGGAAGGAACGGCCAGGTGCTGTCTTAGTATTTATGACTGGATGGGAGGATATAAGCTGTTTAAGGGATCAGCTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGGTTCTGCTTCAAACATGCCATGGTTCAATGGCAACTTCGGAACAGAAACTCATATTTGATAAACCACCTCCAAATGTCAGAAAAATAGTACTTGCTACAAATATGGCAGAGGCAAGTATTACGATCAATGACATTGTTTTTGTCATAGACTGTGGAAAAGCAAAGGAGACCACTTATGATGCTTTGAATAACACGCCATGTCTACTACCTTCTTGGATTTCACAAGCATCTGCGCGACAGGCAAGTAGGGCTGGACGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCTAAATGTGTTTATGAAGCCTTTTCTGAATATCAGCTTCCTGAACTTTTGAGAACGCCCTTGAACTCTCTTTGCTTGCAAATAAAAAGTCTGCAGGTTGAGAGCATTGGAGAGTTCCTATCAGCAGCTTTACAGGCACCAAAGCATCGTGCTGTCCAAAATGCTATTGATTTTCTCACAATGATTGGAGCCTTAGATGAAAAAGAACATCTTACCAATCTTGGGAAGTTTCTATCGATACTTCCTGTAGATCCCAAGCTGGGAAAAATGTTAATAATGGGAGCTATATTTCGGTGCTTTGACCCTGTTCTTACAATAGTTGCTGGCCTTAGCGTCAGAGATCCTTTCCTTTTGCCTCAAGACAAGAGAGATTTGGCAGGGACTGCAAAGTCGAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCTGAAAGAGAAGGATCAGCTTATGAGTACTGCTGGAGAAACTTTCTCTCTGCCCAAACTCTTCAGGCAATTCATTCACTTCGGAAACAGTTTAGCTTCATCTTGAAAGAAGCTGGCTTGGTAGATACTGATGCAAGCATTAATAACAAATTGAGTCATAATCAATCTCTTGTACGTGCAGTCATATGCTCTGGACTCTTTCCTGGTATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGACGATGGCCAGGTTTTATTATACGCAAATTCAGTGAATGCACGTTACCAGACTATTCCTTACCCATGGTTGGTTTTTGGTGAGAAAGTAAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCGATACTTATCTTATTTGGTGGTGCTCTAAGTAATGGGATACAGGCCGGACATCTGAAAATGTTAGATGGGTACGTTGACTTCTTTTTGGATCCTAATTTAGCTGACTGCTATTTGAAGCTTAAGGAAGAACTTGATAAGCTTATCCAAAAGAAGCTAGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAATTGGTTTCAGGGGATCAGTGTGAAGGAAGATTTGTATTTGGCCGTGACAGCCGGAAGCCTAAGGCCTCTAACGATGAGAATAAATTCACAAAAGATGGGACAAACCCCAAGAGCTTGCTGCAGACACTTTTGATGCGAGCAGGGCACTCCCCACCTAAATACAAAACAAAACATCTCAAGACAAATGAGTTCAGGGCATTGGTGGAGTTTAAAGGAATGCAATTCGTTGGCAAACCAAAAAGAAACAAACAACTTGCAGAGAGGGATGCTGCTATAGAGGCATTAGCTTGGTTGACTCACACCTCTGACAATACTCAGCATGAAGATGATAAATCTCCTCCGGATGTCAATGACAACATGTTAAAACTCCTAGGGAAGCGTAGAAAGTCAAAACGACGTTTTGATTGA 3447 0.4163 MHNPKSAASFLIARAKSLQLRHHYHYRSVTSISRSFLFKFQPSLSSPLIFTRFFSGYYNLEQFSDDEYECDFENHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKRDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLIQEYLDRLQLNSEKTADCLDNVKSTNQIKEIDMDENANFCVDESVMEKVLQKRSLRMRNMQRAWQESPEGKKMLEFRKSLPAYREKEGLLQAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVSERVSAERGESLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLSGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRSHFLEDVLEMTGYKLSSFNQVDDYGQEKLWKTQKQLAPRKRKNQITSLVEDALSKSSFENYSPRTRDSLSSWTPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLQTCHGSMATSEQKLIFDKPPPNVRKIVLATNMAEASITINDIVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQASRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPKHRAVQNAIDFLTMIGALDEKEHLTNLGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDTDASINNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFLDPNLADCYLKLKEELDKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRDSRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNTQHEDDKSPPDVNDNMLKLLGKRRKSKRRFD 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02414 1148 SMART DRBM_3 1049 1112 IPR014720 -
Car07g02414 1148 SMART ha2_5 711 802 IPR007502 GO:0004386
Car07g02414 1148 Pfam Double-stranded RNA binding motif 1049 1111 IPR014720 -
Car07g02414 1148 MobiDBLite consensus disorder prediction 1028 1045 - -
Car07g02414 1148 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 61 1042 - -
Car07g02414 1148 Gene3D - 1029 1116 - -
Car07g02414 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 818 IPR027417 -
Car07g02414 1148 SMART ultradead3 249 442 IPR014001 -
Car07g02414 1148 Pfam DEAD/DEAH box helicase 262 412 IPR011545 GO:0003676|GO:0005524
Car07g02414 1148 CDD DEXHc_RHA-like 267 427 - -
Car07g02414 1148 MobiDBLite consensus disorder prediction 1028 1048 - -
Car07g02414 1148 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 868 949 IPR011709 -
Car07g02414 1148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 516 689 IPR001650 -
Car07g02414 1148 Pfam Helicase associated domain (HA2) 712 798 IPR007502 GO:0004386
Car07g02414 1148 Gene3D - 200 429 IPR027417 -
Car07g02414 1148 MobiDBLite consensus disorder prediction 1116 1137 - -
Car07g02414 1148 Gene3D - 691 793 - -
Car07g02414 1148 SUPERFAMILY dsRNA-binding domain-like 1042 1131 - -
Car07g02414 1148 CDD SF2_C_RHA 505 657 - -
Car07g02414 1148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 428 IPR014001 -
Car07g02414 1148 Pfam Helicase conserved C-terminal domain 519 647 IPR001650 -
Car07g02414 1148 PANTHER ATP-DEPENDENT RNA HELICASE 61 1042 - -
Car07g02414 1148 SMART helicmild6 544 649 IPR001650 -
Car07g02414 1148 Gene3D - 512 668 IPR027417 -
Car07g02414 1148 MobiDBLite consensus disorder prediction 1115 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02414 Car-Chr7 44350680 44378436 Dispersed/Transposed