Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02300 ATGACTTTCATCCTCCCTCTAATATTGTCTTTCATTTTGCTCCTTACTTTGTGCTTTGCTTCATGTGCTCTGATAGCCACTCTACAAGAAGATGAAGTGGAAGCACTGAAAGATATAGGGAGAACGCTTGGGAAGAAGGATTGGGACTTCAGCGTAGATCCATGTAGTAGACGGAATTACTGGATATCCCCTACTCAATACAGGGATATTACCTGCAATTGCTCTTTTCTAAACAACACTGTTTGTCATGTTGTTAGTGTTGTTCTAAAAGCACAAAATCTTTCTGGTACTCTTCCACCTGATCTTGTCAGGTTACCTTTTCTCCAAGAAATTGACCTAACCCTCAACTATCTTAATGGTACAATTCCAAAACAATGGGCCACATTAAATCTTGTAAACATTTCTGTCTATGGAAATCGTCTATCTGGTCCAATTCCAAAGGAAATTGGAAACATCGCCACACTCAAGAGCTTGGTATTGGAGTTCAACCAATTTTCTGGAAATCTTCCTCCAGAACTTGGGAGTCTTTCCCAGCTTGAAAGACTGCTTCTTTCCTCCAACAATTTCACTGGAGTGTTACCTGCAACATTTGCTAAGCTCACTGCATTGAAGCAATTTCGAATTGGCGATAGTCAATTCTCTGGAGCAATACCCAACTTTATACAGAACTGGATAAATCTTGACTTTCTCGTGATCCAAGGGAGTGGTTTGAGTGGACCGATTCCTTCTGGAATTTCACTTTTGAAAACCCTCAGTTACTTGACTATTACTGACTTGAATGGATCTGATTCACCTTTTCCACATCTTGAAAACATGTCAAACTTGTCCACATTAGAATTGAGAAGTTGCAATATCATTGGACCAGTGCCTGAATATCTTGGAAAGTTAACTAATCTGAAAGTGATAGACTTCAGCAACAACAAATTAAGTGGACAAATCCCCATGAGCTTCGATGGTCTAAAGAACTTATATTTGCTATTTTTATCTGGGAATCATTTGTCTGGATCGTTGCCTGAATGGATAGATAAACCAGACTTTGTAGGAAATATTTCATGTTTGGAAAACTATCGTTGTCCTAAAACTTGGTACTCTCTCAATATAAATTGTGGTGGAAAGAGCACAACAATCGATGGAAATAAGACATATGAAGATGATTCAAGTGAGATGGGACCAGCAAGGTATCATCAAAGTGGAACACACTGGGCAGTTATAACTTCTGGTCACTTCTTTGGCAGTGGACTCCCTGACTACTACCTATGGCATAATACAACAAAGCTCTCTGTGGAAAAAGATGTTCAACTGTACATGGACGCACGTGTTGCTCCAAATTACCTAACTTACTATGCATTCTGCCTTGGAAATGGAAACTACACCGTGAATCTCCATTTTGCAGAAATAATGTTCAGCGATGATAATACTTTTAGCAGCATTGGCAGGCGTGTATTTGACATCTACATCCAGAGAAACTTGGCGGTGAAGGATTTTGACATTGTAAAATCGGCAGGTGGTGTTGGTAAGGCAGTCATTATAACTTTTACTGCTAGTGTGACTAGTAATGCCTTGGAGATTCGCTTATATTGGGCTGGGAAAGGAACAACCACTATTCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCAATTGATTCTGATTTTACACCCCCGTTGGAAAATAATAGCAGCATACCTGTAGGTTCTGTGGCTGCGATTGTAGCTTCAGGAGCAATTGTTATCATCTTGATAATTGGCATAATGTGGTGGAAAGGATGTTTAAGACTGAAGCGTTTAGGTGCAAGAGAGAAAAAGGATCTTGCTTCACAAACTGGTTTATTCACCTTAAGGAAAATCAAAGCAGCAACAAACAACTTTGATGAATCTTTCAAGATTGGAGAAGGAGGATTTGGTCCAGTTTACAAGGGTGTTCTATCTGATGGCACAGACGTAGCGATTAAGCAGCTTTCTTCTAAATCAACACAAGGATCTCGTGAATTTATTAATGAGATAGGCATGATTTCTACTTTGCAACACCATAATCTTGTTAAGCTCTATGGCTTCTGTATGGAGGATGATCAGTTGTTGTTGATATATGAATACATGGAAAACAATAGCCTTGCTCATGCTTTATTTGCCAAGAAAGAAGACCTAGAAAATCGGCAATTGGGACTGGATTGGAAAACAAGAAAGAGGATTTGTGTTGGTATTGCTAAAGGTTTAGCTTACTTACATGGAGAGTCAAAACTTAAGATCATTCATAGGGACATCAAGGCCACTAATGTATTGTTAGATAAAGACCTCAATCCCAAGATATCTGATTTTGGTTTGGCAAGGCTCAATGAAGAGGACAAAACCCACGTGAACACCAGAATAGCCGGCACTTATGGATATATGGCTCCTGAGTATGCTATGCACGGTTATTTGACGGACAAGGCAGATGTTTATAGTTTTGGAATTGTTGTGTTGGAAATTGTTAGTGGAACCAATAATGCCAATCACCATCCTCAGGAGGAATGCTTCTCTCTTCTTGATTGGGTGCACCTGTTGAAGGAAAAAGACAATCTTATGGAGCTCGTTGATCGGAGGTTGGGCGAAGACTTCAAGAAAGAGGAGGCAACAATGTTGATCAATGTGGCTCTTTTATGCGCCAGTTTTTCTCCATCACTCAGGCCTTCCATGTCTTCCGTTGTAAGCATGCTTGAAGGAAGAACTCATGTTCAAGAGGTGGTGTCTGAATCAACTGAGGTGTTGGATGACAAGAAATATAAGGTGATGCAACAATACTATCAACAAAGAGGAGAAAATAGTATAAGTGAGGTTCAGAGCCAAAGCATCCCAACTGATGAATCTCGTGCCTTTATGTATGATACAGATTCTTCTTGCTGGGAACCAAGAAATTAG 2901 0.3974 MTFILPLILSFILLLTLCFASCALIATLQEDEVEALKDIGRTLGKKDWDFSVDPCSRRNYWISPTQYRDITCNCSFLNNTVCHVVSVVLKAQNLSGTLPPDLVRLPFLQEIDLTLNYLNGTIPKQWATLNLVNISVYGNRLSGPIPKEIGNIATLKSLVLEFNQFSGNLPPELGSLSQLERLLLSSNNFTGVLPATFAKLTALKQFRIGDSQFSGAIPNFIQNWINLDFLVIQGSGLSGPIPSGISLLKTLSYLTITDLNGSDSPFPHLENMSNLSTLELRSCNIIGPVPEYLGKLTNLKVIDFSNNKLSGQIPMSFDGLKNLYLLFLSGNHLSGSLPEWIDKPDFVGNISCLENYRCPKTWYSLNINCGGKSTTIDGNKTYEDDSSEMGPARYHQSGTHWAVITSGHFFGSGLPDYYLWHNTTKLSVEKDVQLYMDARVAPNYLTYYAFCLGNGNYTVNLHFAEIMFSDDNTFSSIGRRVFDIYIQRNLAVKDFDIVKSAGGVGKAVIITFTASVTSNALEIRLYWAGKGTTTIPFGSVYGPLISAISIDSDFTPPLENNSSIPVGSVAAIVASGAIVIILIIGIMWWKGCLRLKRLGAREKKDLASQTGLFTLRKIKAATNNFDESFKIGEGGFGPVYKGVLSDGTDVAIKQLSSKSTQGSREFINEIGMISTLQHHNLVKLYGFCMEDDQLLLIYEYMENNSLAHALFAKKEDLENRQLGLDWKTRKRICVGIAKGLAYLHGESKLKIIHRDIKATNVLLDKDLNPKISDFGLARLNEEDKTHVNTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGTNNANHHPQEECFSLLDWVHLLKEKDNLMELVDRRLGEDFKKEEATMLINVALLCASFSPSLRPSMSSVVSMLEGRTHVQEVVSESTEVLDDKKYKVMQQYYQQRGENSISEVQSQSIPTDESRAFMYDTDSSCWEPRN 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02300 966 CDD STKc_IRAK 631 902 - -
Car07g02300 966 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 286 - -
Car07g02300 966 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 350 945 - -
Car07g02300 966 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 287 342 - -
Car07g02300 966 SUPERFAMILY Protein kinase-like (PK-like) 608 902 IPR011009 -
Car07g02300 966 Pfam Protein kinase domain 628 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g02300 966 SMART LRR_typ_2 296 319 IPR003591 -
Car07g02300 966 SMART LRR_typ_2 176 199 IPR003591 -
Car07g02300 966 SMART LRR_typ_2 320 344 IPR003591 -
Car07g02300 966 Gene3D Phosphorylase Kinase; domain 1 593 700 - -
Car07g02300 966 ProSiteProfiles Protein kinase domain profile. 625 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g02300 966 SMART serkin_6 625 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g02300 966 Gene3D Ribonuclease Inhibitor 269 349 IPR032675 -
Car07g02300 966 SUPERFAMILY L domain-like 52 341 - -
Car07g02300 966 Gene3D - 362 553 - -
Car07g02300 966 Gene3D Ribonuclease Inhibitor 29 266 IPR032675 -
Car07g02300 966 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 71 286 - -
Car07g02300 966 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 350 945 - -
Car07g02300 966 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 287 342 - -
Car07g02300 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Car07g02300 966 Pfam Leucine rich repeat 273 333 IPR001611 GO:0005515
Car07g02300 966 Gene3D Transferase(Phosphotransferase) domain 1 701 928 - -
Car07g02300 966 Pfam Malectin domain 364 548 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02300 Car-Chr7 36423494 36438781 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02300 19 934 Receptor kinase-like Gene Family AT1G53420 52.114 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car07g02300 Pkinase 4.8e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01945 01 44150545 44161915 Car07g02300 07 36423494 36438781 ECH
Car07g02300 07 36423494 36438781 Car07g02300 07 36423494 36438781 ECH