Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01417 ATGGCATCAATAACCACACCCTCCTTACTCTTCTTTTCCTTAATCTCTTTATCATTGGCATTAGACATGTCAATCATTAACTATACCCAAAAAAGTGGTCGTAGTAACGACGAGATAATGACCATGTACGAGAAATGGTTGGTAAAACACCAAAAGATGTATAATGGGTTAGGAGAGAAGGACACAAGATTTCAAATTTTTAAGGATAATTTAAGATTCATTGATGAGCACAATGCTCAAAATTACAGTTATAAAGTTGGGTTGAACAAGTTTGCGGACATAAATAATGAGGAATATCGTGACATGTATTTAGGCACGAAGAGTGATGCTAAACGTAGGGTTATGAAAACTAAGATCACCGGCCACCGGTATACATATAATTCCGGTGATAAGTTACCGGTGAAAGTAGATTGGAGGTTAAAAGGCGCCGTTACTCATATCAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCATTCTCAACCATAGCCACAGTGGAAGCTATAAACAAAATAGTTACAGGGAAGTTTGTGTCTTTATCGGAACAAGAGCTTGTGGATTGTGACAGAGCCTTTAATGAAGGGTGCAATGGTGGTCTTATGGATTATGCCTTCGAATTCATCATTCGAAATGGTGGCATAGACACAGACCAAGACTATCCATACAACGGATTTGAACGCAAATGTGATCCAACAAAGAAAAATGCCAAAGTAGTGAGCATTGATGGATATGAGGATGTTCCATCATACAATGAAAATGCATTAAAGAAAGCTGTGGCTCATCAACCTGTGAGTGTTGCTATTGAGGCCTCTGGCAGGGCTTTACAATTGTATCAATCGGGTGTATTTACCGGTAAATGTGGGACAGACTTGGATCATGGTGTGGTGGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGCTAGTGAGGAATTCATGGGGCACTAACTGGGGTGAAGATGGGTACTTCAAAATTGAGCGTAATGTGAAAAGCACTTCTACAGGGAAGTGTGGAATTGCAATGGAAGCCTCATATCCAGTGAAGTATGGTCAAAACACTAATTCAGCTGCACCTCAACTTTATGTTACCAGTGCTTGA 1101 0.3978 MASITTPSLLFFSLISLSLALDMSIINYTQKSGRSNDEIMTMYEKWLVKHQKMYNGLGEKDTRFQIFKDNLRFIDEHNAQNYSYKVGLNKFADINNEEYRDMYLGTKSDAKRRVMKTKITGHRYTYNSGDKLPVKVDWRLKGAVTHIKDQGSCGSCWAFSTIATVEAINKIVTGKFVSLSEQELVDCDRAFNEGCNGGLMDYAFEFIIRNGGIDTDQDYPYNGFERKCDPTKKNAKVVSIDGYEDVPSYNENALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTDLDHGVVVVGYGSENGVDYWLVRNSWGTNWGEDGYFKIERNVKSTSTGKCGIAMEASYPVKYGQNTNSAAPQLYVTSA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01417 366 Pfam Papain family cysteine protease 132 348 IPR000668 GO:0006508|GO:0008234
Car07g01417 366 CDD Peptidase_C1A 133 347 IPR039417 -
Car07g01417 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 290 300 IPR025660 -
Car07g01417 366 SMART Inhibitor_I29_2 43 99 IPR013201 -
Car07g01417 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 355 - -
Car07g01417 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 307 326 IPR025661 -
Car07g01417 366 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Car07g01417 366 PRINTS Papain cysteine protease (C1) family signature 292 302 IPR000668 GO:0006508|GO:0008234
Car07g01417 366 PRINTS Papain cysteine protease (C1) family signature 307 313 IPR000668 GO:0006508|GO:0008234
Car07g01417 366 SMART pept_c1 132 348 IPR000668 GO:0006508|GO:0008234
Car07g01417 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Car07g01417 366 PANTHER CYSTEINE PROTEASE 25 355 - -
Car07g01417 366 Gene3D Cysteine proteinases 22 350 - -
Car07g01417 366 Pfam Cathepsin propeptide inhibitor domain (I29) 43 99 IPR013201 -
Car07g01417 366 SUPERFAMILY Cysteine proteinases 36 348 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01417 Car-Chr7 13352866 13356338 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03413 04 62780254 62784555 Car07g01417 07 13352866 13356338 ECH
Car07g01417 07 13352866 13356338 Car07g01417 07 13352866 13356338 ECH