Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00408 ATGGGCACCCCTGACAAGAAGATATCTGATCTTGTTGATGTAGTTAGGTCCTGGATCCCTCGAAGGGTCGAGCCACCAAATGTGTCGAGGGATTTTTGGATGCCAGATCAAAGTTGTAGGGTATGCTACGAGTGTGATTCACAGTTCACAGTATTCAACCGCAGGCATCATTGTCGAATCTGTGGTCGAGTTTTTTGTGCAAAATGCACTGCCAATTCCGTTCCCGCGTCTTTGCATGAACCAATTACTGGCCGTGAAGATTTGGAAAGGATCAGGGTCTGTAACTATTGCTTTAAACAATGGGAGAAGGGAGTAGCAGCAGCTGTCGATAATGGCACTCCCTCGGCAACCCCTTGTCTTAGCCCTTCACCGTCTTCGACAAGCTTGGTCAGCACTAAGTCCAGTAGCACCTGTCACAGTAGCAGCAGCACGGCCGGTTCAGTTCCTTATTCAACCGGGTCTTATCAGTGTGTGCCTTGTAGTCCACATCAGTCTTCCCAAATGAATTCGACAACAGACGAGCAAGAAAATTTAAATTCGGGGAGGAGTACTAATCCCTCTATGGCTGTAGAGAATTTGAATTCTAACCAATATGGCTATTGCTTCAACAGGAGTGATGACGAGGATGATGATTATGGTGTGTACCATTCCGACACAGAACCAAGGCATTATTCTCGTGCCAATGACTATGATGATATAGTTAACATTCATGGGATTGACCATGTCTATGGACCACGTATTTCCGATGGAGATAACATTCAGGAAAGAAGTTCGAGTTCCCTAGTGCCACCGCAGAATCTTGAGCTAGAAGGGGCAGATGGAATTCAAGCACCGCGAAAAGAAGCTGATGAACATGATCATACTGATGTATGTGAAACATCTCCCTATCATGAGGAGAATAATAATATGGAGCCTGTGGATTTTGAGAATAATGGGCTTCTGTGGCTGCCTCCTGAGCCAgaagatgaagatgatgatagagaagctattctttttgatgacgatgaagatgaaggtgGTACTGGAGAATGGGGATATTTTCGATCCTCCTCCTCTAGCTTTGGTCCGAGAGAATTCCGTAGCAAAGATAAATCGGGTGAGGATGACAGGAAGGCCATCAAGAATGTTGTGGAAGGGCATTTTAGAGCTCTGGTAGCTCAGCTTTTGCAGGTGGAAAACCTAACTATTGACGAAGATGGCAAAGAGAGTTGGTTGGAGATAATTACCACTTTGTCTTGGGAAGCTGCAACCCTTCTGAAGCCTGATATGAGCAGGGGTGGAGGTATGGATCCTGGTGGATATGTAAAAGTTAAATGCATAGCTTGTGGGCATCGAAATGAAAGCATGGTGGTTAAAGGCATTGTTTGCAAGAAGAATGTGGCTCATCGGCGAATGACATCAAAAATTGATAAACCACGTTTTCTAATACTTGGAGGTGCATTGGAGTATCAACGTGTTTCTAACCAGTTATCGAGTGTTGATACTTTGTTACAGCAGGAGATGGACCATTTGAAGATGGCAGTTGCGAAGATTGATTCTCATCACCCTAATGTTCTTTTGGTAGAAAAGTCGGTATCTCGTTATGCTCAAGAATACCTTCTTGCTAAAGACATCTCACTTGTTCTGAATATCAAAAGGTCGCTTTTGGAGCGTATTGCCCGTTGTACCGGGGCACAGATTGTCCCTTCAATTGATCATTTGACCTCCCCAAAACTGGGTTACTGCGAAACATTCCACGTGGACAAATTTTTGGAGGAGCATGGTAGTGCTGGACAAGGTGGAAAAAAATTAACAAAGACTTTGATGTTCTTTGAGGATTGCCCCAAACCGTTGGGTTGCACTATCTTGCTGAAAGGCTCTAATGGGGATGAGTTGAAGAAGGTGAAACATGTAGTCCAATATGGAGTATTTGCAGCCTATCATTTGGCGCTGGAAACATCTTTTCTTGCAGACGAAGGTGCTTCACCTTTAGAGTTTCCCTTGAAATCTCCCATAACTGTTGCATTGCCCGACAAACCATCAAGTATTGTAAAATCCATTTCAACTATCCCTGGATTTTCTGGTGTCTCTGGTAGAGGGCACCAGGGAGCTGAAACTATTAAAGAAGTACCAAAGTCACTGGTAGGTGAATTGACCCACATGCATGATATCTCCAAAGACGTCAACCAAGTAGCTCGAGATATGCCATCTTCCCATCGTAATCGTTTCTTCCCAAATACTGCTTTTGAGAAGGATGACAAAGAAGGCCCGAAGGAATCTTTTCATTACAGACAAGATGAGGGAAGGAAAACAATGTTGCCTACTGATCTTATTTCAGATTTTTTTGGCACCTTCGAGCCTCCAGGGAAAAACGACAATAACCACATCAAAGCTATGGCATTGGCTTCAAATCAAGGAGCTGATCCTGAGTCATCTATTGTAAAACATGATAATAATATTGATCCTGAGTCACCTATGGCACATTCAAAAGAGGATTTTCCTCCCTCAACTTCTGACCATCAAAGTATTTTGGTCTTTTTATCAACTCGTTGTGTGTGGAAAGGAACTGTTTGTGAAAGATCCCATCTTGTAAGAATTAAATACTATGGAAGCTCTGATAAGCCTTTGGGTCGATTTTTGAGAGATCAACTATTTGATCAGAGTTACACTTGCTGCTCATGTGAAATGCCACCGGAAGCTCATGTTCATTGTTATACTCATCGGCAAGGGAGCCTGACAATTTCTGTCAAGAAACTATTGGAGTTTCCTTTACCAGGAGAAAGGGAAGGTAAAATCTGGATGTGGCACCGGTGCCTGAAATGTCCTCGTGCAAATGGTTTTCCTCCTGCCACACGGAGAGTAGTTATGTCTGACGCTGCGTGGGGATTATCCTTTGGGAAATTCTTGGAGCTGAGTTTCTCAAATCATGCAGCAGCAAGCAGGGTTGCAAGTTGTGGTCACTCTCTCCATAGAGACTGTTTAAGATTCTATGGATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCTTCAATTGACCTTCATTCTGTTTATCTTCCTCCACCTAAACTTGAGTTCAACTATGAAACTCAGGACTGGCTACAGAAAGAAGTGGACGAGCAGGTACATAACAAGAATGAAATACTGTTTAGTGAAGTCAGCAGCGTTCTACATCAAATTTCGGAGAAGTTTTCAGGTCCTCTGCCGCAGAAGGGTGGAAATACAGTGGCAGACTTTAAGCATCTGATTGCTGAACTTAAAGGAATGCTGCAGAAAGAGAAAGAAGAATCCGAGGACTTGTTAAAAAAAATTCTGCATAAAGAGGCCAAAGCTGGTGTACTCATGGTTGATATTCTAGAGCTCTGTAAATTGCGCAGGCATATCCTTATTCTTTCTTATGTATGGGACCAGCGCCTGATATATGCATCCAATCTAAATAAAATTACACTTTCAGAAGATTCAAGGAACTCCTATCAGAGAGATAAATTGATTGGTTCTAGGGAAAAGGTCGTTGAGACAGATGTGTCCACTAGGCCAGCAAGAGGTCATAGCAGTTCTGATTCCTTTCTTTTGGAAACAAAATCTGATGGAATCTTTCTTTTGGAAAACACTAGCCACCTTAACAAATCTGGTGAAATGATCAAAGGTGAGGACAACGGTAAAGACACAGATCATGGTAAGTTTGATCTTTCTCTATCTGTTGGTGCAAATATCAACGATAAATCAAACTGTTCGGAGTTTGGAGGAGTTGTACGAAGGACTTCGTCTGATGGGGGATCTTCTACCATGGCTAATTTATCTGATACCCTTGATGCAGCATGGACTGGTGAAACTCACACCACAAATATATTATACAAAGAAAATGGTGTTCGAGCTCCAGATGCAGCGGCTATGACAGTTCATTCACCTACAGCAGTAGTTACTGCAAAATCCAATCTTGATAATTATACTGCCGACACTGGTGGGGTTGAAACAGGATACACTCATGACTCTAAATCACATTCCAAAGGACTTGATAATAGATGGACTGGGATGCCTTTCGCTAACTTGTGTTCATTCAACAAAACATCTGCATTCAATATGCAGAAGCTTGTTGATTACAACTTTGTCCATGTTTTATCATTTCGAGAGTTGGACCGTCAGACTGGGGCTAGACTGTTTCTGCCTGCTGGCATTAATGATACCATAGTGCCGGTCTATGATGATGAGCCGACTAGTGTTATAGCGCATGTGCTTGTATCGAAAGATTATCATATCCAGATGTCAGAATCCGATAGACCTAAAGACAATTTAGAAAGTTCGGTTTCATTGCCACTATTCGATTCAACAAGCCTACTTTCTCTCAATTCTTTTGATGAGACTATTACTAATAGCTACAGAAGTGTTGGATCTTCTGATGAGAGCATGTTATCCACTTCTGGGTCTCGGAGTTCACTGGTTGCAGATGCACTCCAGTACTCAAAGGATTTTCATGCAAGGGTTTCTTTTAATGATGATAGCTCCCTTGGAAAAGTGAAATATACTGTAACTTGCTACTATGCAAAGAGATTTGAGGCTCTAAGAAGAACTTGTTGCCCTTCTGAGCTAGATTTTGTGCGGCCCCTTAGTCGTTGTAAGAAGTGGGGGGCTCAGGGAGGAAAGAGCAATGTGTTCTTTGCAAAAACTTTGGATGATAGATTTATTGTTAAGCAGGTTACAAAGACAGAGCTTGAGTCATTTATCAAGTTTGCACCAGCTTATTTTAAATATTTATCCGAGTCAATCAGTACAGGGAGCCCAACTTGCCTAGCAAAGATCTTGGGCATTTATCAGGTAACATCAAAACACCTCAAAGGAGGGAAGGAAACAAAAATGGATGTTTTGGTTATGGAAAATCTTCTTTATCGGCGTAACATTAGACGGCTTTATGACCTCAAAGGTTCTTCTCGATCAAGGTATAATCCAGATACAAGTGGGAACAATAAAGTTCTGCTGGATCAGAATCTCATTGAAGCTATGCCAACCTCTCCAATATTTGTTGGGAACAAGGCAAAGCGGCTTCTTGAGAGGGCCGTGTGGAATGATACTGCATTCCTTGCTTCAATATATGTGATGGACTACTCGTTGCTGGTTGGCGTGGACGAAGAAAAGCATGAGCTAGTTTTAGGCATCATTGATTTTATGAGACAATATACATGGGACAAGCACCTTGAAACTTGGGTGAAGACCTCCGGCATCCTTGGTGGACCCAAGAATACTTCTCCAACTGTTATATCGCCACAGCAGTACAAGAAACGATTCCGGAAAGCGATGAGCTTATATTTTCTTATGGTGCCAGATCAATGGTCTCCTCCAAGTTTACAAACCAGTGAGTCCCAAACTGACCTTTGTGATGAAAATTCATGA 5361 0.4204 MGTPDKKISDLVDVVRSWIPRRVEPPNVSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRICGRVFCAKCTANSVPASLHEPITGREDLERIRVCNYCFKQWEKGVAAAVDNGTPSATPCLSPSPSSTSLVSTKSSSTCHSSSSTAGSVPYSTGSYQCVPCSPHQSSQMNSTTDEQENLNSGRSTNPSMAVENLNSNQYGYCFNRSDDEDDDYGVYHSDTEPRHYSRANDYDDIVNIHGIDHVYGPRISDGDNIQERSSSSLVPPQNLELEGADGIQAPRKEADEHDHTDVCETSPYHEENNNMEPVDFENNGLLWLPPEPEDEDDDREAILFDDDEDEGGTGEWGYFRSSSSSFGPREFRSKDKSGEDDRKAIKNVVEGHFRALVAQLLQVENLTIDEDGKESWLEIITTLSWEAATLLKPDMSRGGGMDPGGYVKVKCIACGHRNESMVVKGIVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVSNQLSSVDTLLQQEMDHLKMAVAKIDSHHPNVLLVEKSVSRYAQEYLLAKDISLVLNIKRSLLERIARCTGAQIVPSIDHLTSPKLGYCETFHVDKFLEEHGSAGQGGKKLTKTLMFFEDCPKPLGCTILLKGSNGDELKKVKHVVQYGVFAAYHLALETSFLADEGASPLEFPLKSPITVALPDKPSSIVKSISTIPGFSGVSGRGHQGAETIKEVPKSLVGELTHMHDISKDVNQVARDMPSSHRNRFFPNTAFEKDDKEGPKESFHYRQDEGRKTMLPTDLISDFFGTFEPPGKNDNNHIKAMALASNQGADPESSIVKHDNNIDPESPMAHSKEDFPPSTSDHQSILVFLSTRCVWKGTVCERSHLVRIKYYGSSDKPLGRFLRDQLFDQSYTCCSCEMPPEAHVHCYTHRQGSLTISVKKLLEFPLPGEREGKIWMWHRCLKCPRANGFPPATRRVVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDLHSVYLPPPKLEFNYETQDWLQKEVDEQVHNKNEILFSEVSSVLHQISEKFSGPLPQKGGNTVADFKHLIAELKGMLQKEKEESEDLLKKILHKEAKAGVLMVDILELCKLRRHILILSYVWDQRLIYASNLNKITLSEDSRNSYQRDKLIGSREKVVETDVSTRPARGHSSSDSFLLETKSDGIFLLENTSHLNKSGEMIKGEDNGKDTDHGKFDLSLSVGANINDKSNCSEFGGVVRRTSSDGGSSTMANLSDTLDAAWTGETHTTNILYKENGVRAPDAAAMTVHSPTAVVTAKSNLDNYTADTGGVETGYTHDSKSHSKGLDNRWTGMPFANLCSFNKTSAFNMQKLVDYNFVHVLSFRELDRQTGARLFLPAGINDTIVPVYDDEPTSVIAHVLVSKDYHIQMSESDRPKDNLESSVSLPLFDSTSLLSLNSFDETITNSYRSVGSSDESMLSTSGSRSSLVADALQYSKDFHARVSFNDDSSLGKVKYTVTCYYAKRFEALRRTCCPSELDFVRPLSRCKKWGAQGGKSNVFFAKTLDDRFIVKQVTKTELESFIKFAPAYFKYLSESISTGSPTCLAKILGIYQVTSKHLKGGKETKMDVLVMENLLYRRNIRRLYDLKGSSRSRYNPDTSGNNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIYVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPTVISPQQYKKRFRKAMSLYFLMVPDQWSPPSLQTSESQTDLCDENS 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00408 1786 Pfam FYVE zinc finger 33 102 IPR000306 GO:0046872
Car07g00408 1786 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1435 1760 IPR002498 GO:0016307|GO:0046488
Car07g00408 1786 CDD PIPKc_PIKfyve 1497 1760 IPR044769 GO:0000285
Car07g00408 1786 Pfam TCP-1/cpn60 chaperonin family 386 647 IPR002423 GO:0005524
Car07g00408 1786 SMART fyve_4 28 103 IPR000306 GO:0046872
Car07g00408 1786 Coils Coil 1068 1102 - -
Car07g00408 1786 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1453 1617 IPR027484 -
Car07g00408 1786 Gene3D GroEL 446 619 IPR027409 -
Car07g00408 1786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 109 IPR013083 -
Car07g00408 1786 Gene3D - 1619 1761 - -
Car07g00408 1786 MobiDBLite consensus disorder prediction 274 294 - -
Car07g00408 1786 MobiDBLite consensus disorder prediction 318 340 - -
Car07g00408 1786 MobiDBLite consensus disorder prediction 163 190 - -
Car07g00408 1786 MobiDBLite consensus disorder prediction 738 753 - -
Car07g00408 1786 CDD FYVE_PIKfyve_Fab1 32 99 - -
Car07g00408 1786 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1536 1702 IPR002498 GO:0016307|GO:0046488
Car07g00408 1786 MobiDBLite consensus disorder prediction 726 753 - -
Car07g00408 1786 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1B 1 1780 - -
Car07g00408 1786 SUPERFAMILY GroEL apical domain-like 447 619 IPR027409 -
Car07g00408 1786 MobiDBLite consensus disorder prediction 251 265 - -
Car07g00408 1786 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 102 IPR017455 -
Car07g00408 1786 MobiDBLite consensus disorder prediction 248 368 - -
Car07g00408 1786 SUPERFAMILY SAICAR synthase-like 1494 1760 - -
Car07g00408 1786 SUPERFAMILY FYVE/PHD zinc finger 31 103 IPR011011 -
Car07g00408 1786 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 1 1780 - -
Car07g00408 1786 SMART PIPK_2 1470 1761 IPR002498 GO:0016307|GO:0046488
Car07g00408 1786 CDD Fab1_TCP 382 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00408 Car-Chr7 3609980 3620675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00408 1 1786 EF-hand Containing Proteins AT3G14270 57.369 0.0 1909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00408 07 3609980 3620675 Car07g00408 07 3609980 3620675 ECH
Car07g00408 07 3609980 3620675 Car06g01765 06 17470055 17479005 PCT