Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03004 ATGTCTCCACAAACGCCAATTATTACACTTTTCATGATCCTCCTAGCTTCATTAGTTTTATGTAATTGCTCTTACATTGTGGAACCACTTCATCAAACAAATAGTGAATACTATTACCCTCTACATGATGGTAGGTTGATCAAAACAAAACATCAACATTTTGGTCACATAAATAAATTAGATACCCTTTTTTCTTCAAGGTCTCGTGGAATGATTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGTGATGATAGAGAGGCATTTAAGAAGGCATGGAATGAAGCATGTTCTAAAGGGGCTATCCTTGTGGTACCAAAAAATAGGATCTACCGTCTCAAACCAATAACTTTTTCAGGTCCATGCCAACCCAATACTACCTTTATGATTTATGGAACAATCGAGGCTTGGCCTCAAATGTCAGCATATGAAGAAGATAGGCTACACTGGATTGTATTTGATAGTGTAACGAATTTCAATGTTGATGGTGGTGGTATTTTTAATGGCAAAGGGAAAAAATGGTGGAAAAACTCTTGCAAATTCACCAATAATCTTCCATGCAATGATGAACCAAGGCCTACGGCGGTGACTTTCTATAATTGCAAGAATTTGAGAGTTAAAAACATTAATTTCAAAGATGCACAGAAAATGCATGTAGCATTTTTTAGATGCTTCAATGTGTTTGTTTCAAATTTAGTTGTCACAGCACCAGAAAATAGTCCCAATACCGATGGCATTCATGTGGCAGAGTCACAAAATATAGACATAAGAAAGAGCAATATTGGGACGGGTGATGATTGTATCTCAATAATTAGTGGATCCAAAAATGTTCAAGTTATAGATATCACTTGTGGACCTGGACATGGAATCAGCATTGGAAGCTTAGGAGCTAATAACTCAGAAGCTGAAGTTGTGAATGTGGTAGTGAACAGAGCCACCTTAACAGGAACAACTAATGGAGTGAGAATCAAAACTTGGCAGGGTGGTTCAGGTTATGCAAGAAACATTAAATTTATGAACATAGTAATGCAAAATGTAACAAATCCCATAATCATAGATCAATACTATTGTGATCAAACAGAGCCATGTCAAGAGCAGGACAAAGCAGTGCAACTAAGCCATGTGTTGTACCAAAACATTAGAGGAACAAGTGCTTCAACAGTAGCTATCAAATTTGCTTGCAGTCGAACTGTTCCTTGCAGAGAAATTTACTTACATGATGTGATTTTAGAATCACAAGGTGGTGGAGGCACCACTGCTACATGTGAAAATGTTAGATATGTAAATAGAGGGAAGTTTTATCCTCAATGCTCTCCTTGA 1323 0.3719 MSPQTPIITLFMILLASLVLCNCSYIVEPLHQTNSEYYYPLHDGRLIKTKHQHFGHINKLDTLFSSRSRGMISVDDFGAKADGSDDREAFKKAWNEACSKGAILVVPKNRIYRLKPITFSGPCQPNTTFMIYGTIEAWPQMSAYEEDRLHWIVFDSVTNFNVDGGGIFNGKGKKWWKNSCKFTNNLPCNDEPRPTAVTFYNCKNLRVKNINFKDAQKMHVAFFRCFNVFVSNLVVTAPENSPNTDGIHVAESQNIDIRKSNIGTGDDCISIISGSKNVQVIDITCGPGHGISIGSLGANNSEAEVVNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFMNIVMQNVTNPIIIDQYYCDQTEPCQEQDKAVQLSHVLYQNIRGTSASTVAIKFACSRTVPCREIYLHDVILESQGGGGTTATCENVRYVNRGKFYPQCSP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03004 440 PANTHER POLYGALACTURONASE 7 439 - -
Car06g03004 440 PANTHER - 7 439 - -
Car06g03004 440 SMART pbh1 305 326 IPR006626 -
Car06g03004 440 SMART pbh1 252 273 IPR006626 -
Car06g03004 440 SMART pbh1 275 295 IPR006626 -
Car06g03004 440 SMART pbh1 334 355 IPR006626 -
Car06g03004 440 SMART pbh1 225 251 IPR006626 -
Car06g03004 440 Gene3D - 53 436 IPR012334 -
Car06g03004 440 Pfam Glycosyl hydrolases family 28 104 427 IPR000743 GO:0004650|GO:0005975
Car06g03004 440 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Car06g03004 440 SUPERFAMILY Pectin lyase-like 64 439 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03004 Car-Chr6 51433738 51437791 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03004 06 51433738 51437791 Car05g00508 05 24640612 24645283 PCT