LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g02158	ATGAAAAGAGTAATCACTTTGCTCATTTCTCTCTCTAACCGTAACCCTCTCTTACAGCCGCCCTCCTCACTCCCCTCTCGTGCCGTCACCTTCTTCTCCAGATCTCATATTTCCACTGCCTCCGCCGCCATGCCAGGAGATGATCAGGATTGGCCGGCTAAGCGCGTCAGAGACACCTACATCAAGTTCTTCCAAGAAAAAAATCATGTTAACTGGAAGTCTAGCCCAGTCGTTCCCTTCAATGACCCTACCCTCCTCTTTGCTAACGCCGGGATGAACCAGTTCAAGCCAATTTTTTTGGGGACTGCTGATCCTAATACTTCCTTGAGCAAACTCTCTCGTGCTTGCAATACCCAGAAGTGCATTCGAGCTGGTGGAAAGCACAATGATCTTGACGACGTGGGGAAAGACACTTACCATCACACGTTCTTTGAAATGTTGGGAAATTGGTCGTTTGGGGATTACTTTAAAGTGGAAGCTATTAGCTGGGCATGGGAACTTTTAACCGAAGTTTATAAATTACCATCAGATCGCATTTATGCTACATATTTTGGTGGTGATGAGAAATTGGGTCTTGCCCCTGACAATGAGGCTAAAGATATATGGTTAAAGTTTTTGCCTCCTGGACGCGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGCGACACTGGTCCTTGTGGACCTTGCACCGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCGTCTTTGGTTAATAATGACGATCCTACCTGCATTGAGATATGGAACCTCGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAATCCCTGCCTGCAAAGCATGTCGACACTGGCATGGGTTTTGAACGATTGACCTCTATACTGCAGAACAAAATGAGCAATTATGACACTGATGTCTTCATGCCTATCTTTGATGCTATTCAGCTGGCAACTGGTGCTCGGTCATATTCTGGGAAAATCGGACCAGAGGACGCAGATAAAGTTGATATGGCATACAGAGTTGTTGCAGATCACATCAGGACTCTGTCATTTGCTATTGCTGATGGTTCTCGTCCTGGTAACGAAGGCCGTGAATATGTTCTGAGGCGTATACTCCGTCGAGCTGTTCGGTATGGGCGTGAAGTGCTAAAAGCTGAAGAGGGTTTCTTCAATGGGCTTGTAAATGTTGTGGCAAATTTGATGGGTGATGTTTTCCCCGAGCTAAAACAGCAGGAAGTGCACATTAGGAATGTTATTCAAGAGGAGGAGGAAAGTTTCGGCCGAACCTTAGTTAAGGGGATTGCGAAATTTAAGACAGCTGTTCAACATGTTCAGGGAAACATACTGAGTGGGGAGGTAGCATTTGAGTTGTGGGATACATATGGGTTCCCTTTAGATCTCACACAGCTTATGGCTGAAGAGAAAAAATTACTCGTTGATGTCGAAGGTTTTAATAGTGCTATGGAAGCTGCAAGAGAAAGATCAAGAACTGCTCAAAATAAGCAAGCTGGCGGTGCTATTGTCATGGATGCAGATGCTACATCAGCGTTGCACAAAAGAGGCATAACTCCTACAGATGACAGTTTCAAATATGCTGTGTTCAGGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATTCTGTTAATACTGATGGTGATGTTGGTGTAGTTCTGGAATCTACAAGCTTCTATGCGGAGCAAGGTGGTCAGATTTTCGATACTGGGTCACTTGATTTTCAACATGCTTCATTTCAAGTTTATAATGTTCAAGTTTTCGGAGGTTTCGTGCTTCACATTGGTAATGGATCTGGTATCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGATTATGAAAGACGTGCCCTTATAGCCCCTAACCATACATGCACACACATGCTAAATTTTGCTCTTAGGGAAGTACTTGGCAATCATGTAGACCAGAAAGGATCTATCGTACTTCCTGAAAAATTGAGATTTGATTTTTCTCACGGTAAGCCTGTTGATGCTGATTCTTTAAGGAGAATCGAGTCAATTGTTAATGACCAAATTAAAGCTGAATTGGATGTAAATGCAAAGGAGGTAACTCTTGCTGAAGCTAAGCGAATTAATGGTCTGCGAGCTGTTTTTGGAGAAGTTTATCCAGACCCGGTTAGAGTTGTGTCAGTTGGTCAAAAAGTTGAAGATCTCCTTGCCGAACCTGAGAGCGAAAAGTGGCTATCTATTTCTTCTGAATTGTGTGGCGGTACCCATATTTTAAACACACGAGAGGCTAAAGCTTTTGCACTCTTAGCTGAGGAAGGAATTGCTAAGGGAATCCGCAGAATAACAGCTGTTACAACTGATCGTGCTTCTGATGCAATGAAAATGGCAGATGAATTTGAGCGGCAAGTAGATGAAGCGGCCAAGCTGGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATCTCTGAAAAGCAATGTGGAAACGCTATCAATTCCTGCAGCCAAGAAAGCTGATATCAAGACCAAGATAGCTCTACTTCAGGATCAAGTGAGAAAAGCTCAAAAGCGTGTTGCTGAAGAAAACAAACGGAAAGCTGTAATGCTAACAGTGGAGAAGGCTGAGTTAGCTGTTTCAGATGGGAAATCTTTTTGCATATCTCACGTTGATGTTGGCCTGGATGTCGCAGCAGTTCGCGAGGCTGTTACAAAGGTCATTGATCAGAAGGGGTTATCAGTGATGGTTTTTAGCACTGACGAGTCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCGGAGAAAGGAGATAAAGTTAAGCTGGATGTATCAGAGTGGCTGAGTAATGCTTTGGGCCCACTGAAAGGAAGATGTGGTAAAGGAAAAGGAGGTCTTGCAACGGGACAGGGTACAGATGCTTCACACGTAAATGAGGCTATGGATCTTGCGGTAAAATTTGCATCCATCAAATTGACTTAA	2973	0.4369	MKRVITLLISLSNRNPLLQPPSSLPSRAVTFFSRSHISTASAAMPGDDQDWPAKRVRDTYIKFFQEKNHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWELLTEVYKLPSDRIYATYFGGDEKLGLAPDNEAKDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQLATGARSYSGKIGPEDADKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAEEGFFNGLVNVVANLMGDVFPELKQQEVHIRNVIQEEEESFGRTLVKGIAKFKTAVQHVQGNILSGEVAFELWDTYGFPLDLTQLMAEEKKLLVDVEGFNSAMEAARERSRTAQNKQAGGAIVMDADATSALHKRGITPTDDSFKYAVFRDHESVVKAIYTGSEFVDSVNTDGDVGVVLESTSFYAEQGGQIFDTGSLDFQHASFQVYNVQVFGGFVLHIGNGSGISVGDKVVCKVDYERRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADSLRRIESIVNDQIKAELDVNAKEVTLAEAKRINGLRAVFGEVYPDPVRVVSVGQKVEDLLAEPESEKWLSISSELCGGTHILNTREAKAFALLAEEGIAKGIRRITAVTTDRASDAMKMADEFERQVDEAAKLEGSLLEEKVSSLKSNVETLSIPAAKKADIKTKIALLQDQVRKAQKRVAEENKRKAVMLTVEKAELAVSDGKSFCISHVDVGLDVAAVREAVTKVIDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKVKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASHVNEAMDLAVKFASIKLT	990

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car06g02158	990	Pfam	DHHA1 domain	846	984	IPR003156	GO:0003676
Car06g02158	990	SUPERFAMILY	ThrRS/AlaRS common domain	622	802	IPR018163	GO:0000166
Car06g02158	990	Gene3D	-	877	985	-	-
Car06g02158	990	SUPERFAMILY	Translation proteins	550	622	IPR009000	-
Car06g02158	990	Pfam	Threonyl and Alanyl tRNA synthetase second additional domain	724	782	IPR012947	GO:0004812\|GO:0005524\|GO:0043039
Car06g02158	990	PANTHER	BNACNNG61840D PROTEIN	29	989	-	-
Car06g02158	990	Pfam	tRNA synthetases class II (A)	56	626	IPR018164	GO:0000166\|GO:0004813\|GO:0005524\|GO:0006419
Car06g02158	990	SMART	tRNA_SAD_4	724	783	IPR012947	GO:0004812\|GO:0005524\|GO:0043039
Car06g02158	990	SUPERFAMILY	Class II aaRS and biotin synthetases	53	303	IPR045864	-
Car06g02158	990	PANTHER	ALANYL-TRNA SYNTHETASE	29	989	-	-
Car06g02158	990	Hamap	Alanine--tRNA ligase [alaS].	51	989	IPR023033	GO:0004813
Car06g02158	990	Gene3D	-	623	799	-	-
Car06g02158	990	Gene3D	-	523	622	-	-
Car06g02158	990	Gene3D	Bira Bifunctional Protein; Domain 2	52	300	IPR045864	-
Car06g02158	990	ProSiteProfiles	Alanyl-transfer RNA synthetases family profile.	51	796	IPR018165	GO:0003676\|GO:0004813\|GO:0005524\|GO:0006419
Car06g02158	990	CDD	AlaRS_core	53	299	-	-
Car06g02158	990	Coils	Coil	836	863	-	-
Car06g02158	990	TIGRFAM	alaS: alanine--tRNA ligase	56	967	IPR002318	GO:0000166\|GO:0005737
Car06g02158	990	SUPERFAMILY	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	304	506	IPR018162	GO:0000166\|GO:0004813\|GO:0005524\|GO:0005737\|GO:0006419
Car06g02158	990	PRINTS	Alanyl-tRNA synthetase signature	129	140	IPR002318	GO:0000166\|GO:0005737
Car06g02158	990	PRINTS	Alanyl-tRNA synthetase signature	257	268	IPR002318	GO:0000166\|GO:0005737
Car06g02158	990	PRINTS	Alanyl-tRNA synthetase signature	284	297	IPR002318	GO:0000166\|GO:0005737
Car06g02158	990	PRINTS	Alanyl-tRNA synthetase signature	341	357	IPR002318	GO:0000166\|GO:0005737
Car06g02158	990	PRINTS	Alanyl-tRNA synthetase signature	365	378	IPR002318	GO:0000166\|GO:0005737

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g02158	Car-Chr6	22044577	22055708	Dispersed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car06g02158	06	22044577	22055708	Car06g02158	06	22044577	22055708	ECH