Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02152 ATGGGCAAGTCAAGCAAGAAATCCGCCACCAAGGTTGATGCTGCTCCTGTTGTTGTTTCTCCAGTGAAGTCTGGCAAGAAAGccaagagacaggctgaggatgaagtcaagcaagtgagttcaaagaagcaaaaggttgaagaggttgctgccaagcaaaagaaggaagctcagttgcaaaaagttaaggagagtagttctgacgactcttcctctgaatctgaagatgagAAACCTGCTCCTAAGGTGGCTGTTCCTGCTAAAAAGACACCAGCTAAAAACGGGAACTTGAAGAAAGCCAAGCCAGTTTCTAGCTCTTCAGAGGAATCTTCTGAGGAGGAATCCTCCGAAGATGAGAAACCTGCACCAAAAGCTGTTCCTTCCAAAAATCAACCTGCTAAAAATGGGGCCGCGGCAGCaaagaaagctcccagttcttctgactcatctgatgaagattctgacgaggaagaaGCTCCAAAGACCAAGGTTGTCCCTGCTGCAAAGAAGCCAGTTGAAAGCTCTGACAGTGATAGTTCTGAGTCTGATTCTGACGAGGACAAGAATAAGAAAAAACCTGCAACTACTATAGCCAAGAAAGTGGAGACTAGCGATAGTTCAGATGATGATTCAAGTGATGACGAAGACAATGAAACAAAAAAGCCTGTAACTGCTGTGTCGAAACCTATTGCTGTTGCAAAAAAGGAGGAAAGCTCAGATTCTGATGATGACAGCAGCTCTGATGAAGACACCAAAACTGAAAAAGTTTCTAATGGAACCAAGAAACCCTCATCTGTTCCCAAGACTGTTAAGAAAGAGTCTAGTGACTCAGAGAGTGATTCTTCTGATGATGAGGATAATATGAAAGTTGACAAGGATGATGATAGCTCTGAAAGTGATGAAGAGCCACCAAAGAAAAAGGCTGTGAAAGAATCAAAAGAAAGCAGTGATAGTTCTGATGACAGTGAAGATGAAAGTGAGGAGAAACCAGTCAAAACTCCTCAGAAAAAGATTAAGGATGTTGAGATGGTTGACGCTACCAAATCTGCAAAGAAAGCTCCTAATACCCCAGCTACACCAAATGAACAGAGTGGTGCTTCAAAGACACTATTTGTTGGAAACCTGTCATTTAATGTGTCACAAGCTGACATCGAACATTTCTTCCAAGATGTTGTTGATGTTCGTCTTGCTGTGGATGATGAAGGAAGATTTAAAGGATTTGGTCATGTTGAGTTTGCAACACCAGAGGCGGCCCAGACTGCACTGGAGTTGAATGGGCAGGATTTATTGAATCGTGCTGTCCGTCTTGATCTAGCCAGGGAAAGGGGTGCTTTTACCCCTAACTCAGCTCCCAGGGGACCCAGAGGTCAGTCTCAAACAGTATTTGTCAGGGGTTTTGACAAATCTCAAGGCGAGGATGAGATTAGAGCTAGTTTGGAGGAACATTTTAGTTCTTGTGGTGAAATTACAAGGGTGTCAATCCCTAAAGATTATGACTCTGGTTATGTCAAGGGATTTGCTTACATGGACTTCAAAGATTCTGACAGTCTCGGCAAAGCTCTAGAACTACATGAATCTGAacttggtggttatactttgtcggtggatgaagccaaacccagagaaagtaatcaaggtTCAGGAGGTAGAGGTGGAGGTCGATTTGGTGGAAGGGACAGTGGAGGTAGATTTGGTGGTGGAAGGAGTGGTGGAAGAGGTCGATTTGGTGGAAGGGACAGTGGTGGTAGAGGAGGAAGAGGTGGAGGTGGTAGAGGTCGTGGATTTTCAAATAGACCAAACCTTGCTGCAGAAGGCACAGGCAAAAAGACCACTTTTGCTGACGACTAG 1848 0.3815 MGKSSKKSATKVDAAPVVVSPVKSGKKAKRQAEDEVKQVSSKKQKVEEVAAKQKKEAQLQKVKESSSDDSSSESEDEKPAPKVAVPAKKTPAKNGNLKKAKPVSSSSEESSEEESSEDEKPAPKAVPSKNQPAKNGAAAAKKAPSSSDSSDEDSDEEEAPKTKVVPAAKKPVESSDSDSSESDSDEDKNKKKPATTIAKKVETSDSSDDDSSDDEDNETKKPVTAVSKPIAVAKKEESSDSDDDSSSDEDTKTEKVSNGTKKPSSVPKTVKKESSDSESDSSDDEDNMKVDKDDDSSESDEEPPKKKAVKESKESSDSSDDSEDESEEKPVKTPQKKIKDVEMVDATKSAKKAPNTPATPNEQSGASKTLFVGNLSFNVSQADIEHFFQDVVDVRLAVDDEGRFKGFGHVEFATPEAAQTALELNGQDLLNRAVRLDLARERGAFTPNSAPRGPRGQSQTVFVRGFDKSQGEDEIRASLEEHFSSCGEITRVSIPKDYDSGYVKGFAYMDFKDSDSLGKALELHESELGGYTLSVDEAKPRESNQGSGGRGGGRFGGRDSGGRFGGGRSGGRGRFGGRDSGGRGGRGGGGRGRGFSNRPNLAAEGTGKKTTFADD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02152 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 441 IPR000504 GO:0003723
Car06g02152 615 CDD RRM2_NUCLs 460 538 IPR034350 -
Car06g02152 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 434 IPR000504 GO:0003723
Car06g02152 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 462 533 IPR000504 GO:0003723
Car06g02152 615 SUPERFAMILY RNA-binding domain, RBD 356 456 IPR035979 GO:0003676
Car06g02152 615 MobiDBLite consensus disorder prediction 279 298 - -
Car06g02152 615 PANTHER BNAA08G02930D PROTEIN 200 604 - -
Car06g02152 615 Gene3D - 447 565 IPR012677 -
Car06g02152 615 CDD RRM1_NUCLs 369 442 IPR034349 -
Car06g02152 615 Gene3D - 279 446 IPR012677 -
Car06g02152 615 MobiDBLite consensus disorder prediction 26 83 - -
Car06g02152 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 459 540 IPR000504 GO:0003723
Car06g02152 615 SMART rrm1_1 369 437 IPR000504 GO:0003723
Car06g02152 615 SMART rrm1_1 460 536 IPR000504 GO:0003723
Car06g02152 615 MobiDBLite consensus disorder prediction 1 366 - -
Car06g02152 615 MobiDBLite consensus disorder prediction 352 366 - -
Car06g02152 615 MobiDBLite consensus disorder prediction 325 347 - -
Car06g02152 615 SUPERFAMILY RNA-binding domain, RBD 450 570 IPR035979 GO:0003676
Car06g02152 615 MobiDBLite consensus disorder prediction 183 206 - -
Car06g02152 615 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 200 604 - -
Car06g02152 615 MobiDBLite consensus disorder prediction 532 615 - -
Car06g02152 615 MobiDBLite consensus disorder prediction 299 317 - -
Car06g02152 615 Coils Coil 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02152 Car-Chr6 21929040 21933843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02152 346 534 Eukaryotic Initiation Factors Gene Family AT4G34110 27.320 1.16e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02152 06 21929040 21933843 Car06g02152 06 21929040 21933843 ECH