Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01884 ATGACAGAGATTAAAGACTCTGCGATAAAGCTTTTTGGGAGAACAATTTCGCTTCCACTGAATCCCAATGACTCTTCCTCTCCTTCTTCTCCGACACAATTGAACTCTGCAATACAACACGAACCTGAGGAACCATCAAGGAAAGAACTCACCACAGTACAAGATGACGATGCCTCACAACAAACCACAGAGGATTTAAAATCTCCCACAACATCTTCAGCCATACTTGAGAATCCTCCAAAGACTCCCTCAGCTGAAACCGAAAGTTCATTACCAAAATCTTCTACAAATGGAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTAAAGAAACCTGATAAAGTGGTTCCATGCCCGCGATGTAATAGCATGGAAACCAAATTCTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAAAATTGTCAACGATATTGGACTGCAGGAGGAACAATGAGAAATGTCCCAGTTGGGGCTGGTCGCCGCAAGAACAAGAACCCGTCTACCTCGCATTATCGACATCTGATGATTCCAGAGGCAGCTAAACTTAGTTCCCCTAATGGATTACACAATTCTGTTTTGGGAAATGGAGCAGCTGTCTTGGCGTTTGATTCAGATTCGCCGCTTTGTAATACCATGGCTTCTGTATTGAACATTGCCGAGAGACACCAAAACCGCATGCCAAATGTGTTTCATCACGCAACCGAGCCAAATACTTTTGTTTCCTATGGTGGAGAAAACGATCACTCGATTACAACTCCAACTTTGTCAGAGAGGAAAGACCACACTGGCTCAAATGGATCAATGGATAAAAGAGTTGACGGTTTCCCTCCTCAATTGCAATATATTCCGAGTACCCTTTTGCCTTATCCATGGAACCCTGCGATTCCTCCTCCTACATTTTGTCCACCAAGTTATCCATTAGCATTCTATACTCCACCTCCATATTTTGGTTGCATGCCACCTTCATGGAATATATCATGTATCTCACCACAAAGTACTTCTTCTGTTAACCACTGTGACTCTCTTCATAGATCTATCCCATACTCACCAACTTTAGGGAAACACTCAAGGGATGGAAACATAATTACACCACAGAACGAAAAACACGATCAAGAACACAGTAATACCGAAAGCAGCGTTTTGATCCCCAAAACACTTAGATTTGATGACCCAAGTGAAGCCGCAAAGAGTTCATTATGGTCAAAACTTGGAATCAATAACGACAAGGCGAATTCTATAAATGGAGGAACCATGTTCAATGCATTTCAGTCCAAGGGAAAGGATAAGAATCACTCGGTTGAAGCAGCAGCATCGACGCTGATGTATGCCAACCCTGCAGCTTTATCACGGTCGCGTACCTTCCATGAACAAACCTAA 1398 0.4263 MTEIKDSAIKLFGRTISLPLNPNDSSSPSSPTQLNSAIQHEPEEPSRKELTTVQDDDASQQTTEDLKSPTTSSAILENPPKTPSAETESSLPKSSTNGEQSETSVSEEKTLKKPDKVVPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNPSTSHYRHLMIPEAAKLSSPNGLHNSVLGNGAAVLAFDSDSPLCNTMASVLNIAERHQNRMPNVFHHATEPNTFVSYGGENDHSITTPTLSERKDHTGSNGSMDKRVDGFPPQLQYIPSTLLPYPWNPAIPPPTFCPPSYPLAFYTPPPYFGCMPPSWNISCISPQSTSSVNHCDSLHRSIPYSPTLGKHSRDGNIITPQNEKHDQEHSNTESSVLIPKTLRFDDPSEAAKSSLWSKLGINNDKANSINGGTMFNAFQSKGKDKNHSVEAAASTLMYANPAALSRSRTFHEQT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01884 465 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Car06g01884 465 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Car06g01884 465 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Car06g01884 465 MobiDBLite consensus disorder prediction 18 40 - -
Car06g01884 465 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 465 - -
Car06g01884 465 PANTHER CYCLIC DOF FACTOR 2 1 465 IPR045174 GO:0003700|GO:0006355
Car06g01884 465 MobiDBLite consensus disorder prediction 257 280 - -
Car06g01884 465 MobiDBLite consensus disorder prediction 55 104 - -
Car06g01884 465 MobiDBLite consensus disorder prediction 15 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01884 Car-Chr6 18821923 18825412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01884 4 463 C2C2-Dof Transcription Factor Family AT5G39660 40.354 3.04e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car06g01884 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01884 - - gmx:100813315 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01884 06 18821923 18825412 Car06g01884 06 18821923 18825412 ECH
Car06g01884 06 18821923 18825412 Car07g00937 07 8286664 8288715 ECH