Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01843 ATGGCTGTATCTGAAGCACCCCAAACCCCAACCCCTCAGATGGTTGGCAATGCTTTTGTGGAGCAGTATTATTCTATTCTGCACCAAAACCCCGATCAGGTTCATAGGTTTTACCACGATTCAAGTGTCATGAGTCGACCTGAGGAAGATGGTACCATGATAACTGTCACTACCACTGCAGAAATTGATAAAAAGATAAAATCTCATGATTACACAAGCTTTAGAGTTGAGGTTTTGAGTGCTGATGCTCAGCCTTCATATAATAATGGGGTAATGGTTGTAGTGACTGGCTGCTTGACTGGAACTGACAATGTCAAACGCAAGTTTGCTCAGTCATTTTTCCTAGCCCCACAGGACAAGGGCTTCTATGTTTTGAATGATGTGTTTAGATATGTTGAGGAGTATAAGTCGGTTGATATTGAGTCTGTACCATCTAATGATGCTGATGAAAGTGCTCCATCGGAAGCTTTTACTCCAGAGCCTGAGCCTAATCATGTTCCTGAAGACATTCCACCCAGACAATCTGTTGTTGCTGATACTGACACTAACATCAGCAAAGAAGTGAGCCTACCGCTGGAGAATGGAAAATTATCAGTTACTGAAAATGTGATTCCTGTTAATCATGTTAAAGAGACAATTCATCAGGAACAACCCTCAAGCACTGAGAAAGTTGCTTCTAATACACAGGAGGATACTCCAAAAAAGTCTTTTGCATCCATTGTGAATGCTTTGAAAGATAACTCTAAACCCTTCCATTTGAGGACTTCTCCTGCAAAACCTGCTGTGCAACAACCCCGTGTTATTAGTGCGCCTGCTCCTGAAGCACCAGCCCCTAACACGGACAGTCCATTAGAAAAGAATAATGAGAATGCAGGTAAGGCTCATGCAATTTTTGTTGCAAATTTGCCTATGAATGCAACAGTAGAGCAATTGGATCGGGTTTTCAAGAAATTTGGCCCCATTAAACCCAATGGTATTCAAGTTAGAAGCAACAAGCAACAGGGATCATGTTTTGGTTTTGTGGAATTTGAATCTGCTGCTTCAATGCAAAGTGCCCTAGAGGCCTCTCCTCCTGTTATGTTGGACAACCGTAGACTTTCAATTGAAGAAAGGCGAGCTAATAATGATAGGGTGCGATATTCATCAGGACGGGGTGGATTCCGAACTGACAACTTCAGGGGCCGTGGCAACTTTGGTGGCGGCCGCGGTGGTGGCTTTAACGGCAGGAACGATTTTGAGAAGCGAGGTGAGTTCTCTGGCAGGCCTCGAGGTGGCAATAACAATGGCAATAACAATGGGCGAAGCAATGGGGATGCTGCACCTAGGAGTTATCAGAATGGTGGAAAAGTCACTCGTCAACCGGTGAAAGTTCAATAA 1377 0.4386 MAVSEAPQTPTPQMVGNAFVEQYYSILHQNPDQVHRFYHDSSVMSRPEEDGTMITVTTTAEIDKKIKSHDYTSFRVEVLSADAQPSYNNGVMVVVTGCLTGTDNVKRKFAQSFFLAPQDKGFYVLNDVFRYVEEYKSVDIESVPSNDADESAPSEAFTPEPEPNHVPEDIPPRQSVVADTDTNISKEVSLPLENGKLSVTENVIPVNHVKETIHQEQPSSTEKVASNTQEDTPKKSFASIVNALKDNSKPFHLRTSPAKPAVQQPRVISAPAPEAPAPNTDSPLEKNNENAGKAHAIFVANLPMNATVEQLDRVFKKFGPIKPNGIQVRSNKQQGSCFGFVEFESAASMQSALEASPPVMLDNRRLSIEERRANNDRVRYSSGRGGFRTDNFRGRGNFGGGRGGGFNGRNDFEKRGEFSGRPRGGNNNGNNNGRSNGDAAPRSYQNGGKVTRQPVKVQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01843 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Car06g01843 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 385 IPR000504 GO:0003723
Car06g01843 458 PANTHER BNAA02G14660D PROTEIN 1 447 - -
Car06g01843 458 SUPERFAMILY RNA-binding domain, RBD 292 405 IPR035979 GO:0003676
Car06g01843 458 CDD NTF2 11 133 IPR018222 -
Car06g01843 458 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Car06g01843 458 MobiDBLite consensus disorder prediction 212 234 - -
Car06g01843 458 Gene3D - 278 383 IPR012677 -
Car06g01843 458 Gene3D - 4 138 - -
Car06g01843 458 SUPERFAMILY NTF2-like 11 132 IPR032710 -
Car06g01843 458 CDD RRM_SF 297 369 - -
Car06g01843 458 MobiDBLite consensus disorder prediction 423 458 - -
Car06g01843 458 MobiDBLite consensus disorder prediction 142 173 - -
Car06g01843 458 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Car06g01843 458 SMART rrm1_1 296 369 IPR000504 GO:0003723
Car06g01843 458 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 447 IPR039539 -
Car06g01843 458 MobiDBLite consensus disorder prediction 211 234 - -
Car06g01843 458 MobiDBLite consensus disorder prediction 377 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01843 Car-Chr6 18278603 18282709 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01843 06 18278603 18282709 Car06g01843 06 18278603 18282709 ECH