Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01773 ATGGCAGTTTTACCTACAAATTCCTCCGGCTTGGAATTGAGCATATCTGTCCCAGGTTTTGCTTCTTCCCCAACCACCTTTCTCCACTCATCATCTGTGAAAAAGTTGGACATGAACCAACTACCCATAGAAGAAGGATGGATTAATATGTCATCGAATTGGAACTTAGAAGAGGAAGACGAACAAGAAAACAGCAATGGGGATCATCCTCCTCGCAAAAAACTCCGTCTCACAAAGGAACAGTCCCATCTCCTTGAAGAAATCTTCAGAAAAAACCACACTTTAAATCCCAGGCAAAAAGAGTGTTTGGCAATGCAGCTGAAGCTTCGACCAAGGCAAGTAGAGGTGTGGTTTCAGAACCGGAGGGCCAGGAGTAAGTTGAAGCAGACTGAACTAGAATGTGAATATCTAAAGCGATGGTTTGGGACTCTTACAGAACAAAATCGGAGGTTGCAAAGAGAAGTTGAGGAACTGAGGGCTCTGAAGGTGGATCCACCAACTGTATTATCCCCTTACAGTTGCGAGCCACTCCCAGCTTCAACCTTATCGATGTGTCCTCGATGTGAGCGTGTCACAACCAATGTCACAGCCACTAACAACAAACCAACCAACGATGTCGTGAATAATTTGTCTCATAATATCCCGATACATACCCTCCAATGTGTCAAGTATGAAACGTCTTGTTGA 687 0.4425 MAVLPTNSSGLELSISVPGFASSPTTFLHSSSVKKLDMNQLPIEEGWINMSSNWNLEEEDEQENSNGDHPPRKKLRLTKEQSHLLEEIFRKNHTLNPRQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTELECEYLKRWFGTLTEQNRRLQREVEELRALKVDPPTVLSPYSCEPLPASTLSMCPRCERVTTNVTATNNKPTNDVVNNLSHNIPIHTLQCVKYETSC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01773 228 CDD homeodomain 71 129 IPR001356 GO:0003677
Car06g01773 228 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Car06g01773 228 Pfam Homeobox associated leucine zipper 128 161 IPR003106 GO:0006355|GO:0043565
Car06g01773 228 Coils Coil 141 164 - -
Car06g01773 228 Pfam Homeodomain 72 126 IPR001356 GO:0003677
Car06g01773 228 PANTHER - 1 199 - -
Car06g01773 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 199 - -
Car06g01773 228 Gene3D - 55 133 - -
Car06g01773 228 SMART halz 128 171 IPR003106 GO:0006355|GO:0043565
Car06g01773 228 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Car06g01773 228 SMART HOX_1 70 132 IPR001356 GO:0003677
Car06g01773 228 SUPERFAMILY Homeodomain-like 60 129 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01773 Car-Chr6 17594473 17598044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01773 33 207 Homeobox Transcription Factor Family AT1G70920 56.180 1.02e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car06g01773 Homeodomain 7.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01773 06 17594473 17598044 Car06g01773 06 17594473 17598044 ECH