Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01743 ATGCAAGGTCAAAGGAGGAGTACTGGGTCCTTCCCAGCAATTGTTAGCATGATGCCAGGTCCTAGTGCTAGTGGCACTGATATGAATCGCCAGCCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAGATTATAGGGGGTCTTCCGGTGAAACTGCGTGTTTACGTGGTGCTGGTCCTAATGCAAGCTTTAGTGGCTGGAATACCGGTGAACCCAGTTCTGGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATAGGCTGTGTTCTTCGCGTGGTGCTACCTCTGAAGATGGTCTAAGACCCGAGGAAAGGCAATTACTTGGGAACCAATCTAGAATTCACCCTTCCTTTTTGCAAGGTTCCAGCTCTACTCATACAAATCAGAGTATTAATCTCGGTATGGGACACAATGCAAACTCTGCTGATCGCGGGAAAGGAAAAGAATCTGGTAGTGGCGTTAATAACAGCAATCCTTGTGGATTAGATAGAGAGAAGACATCACTAGGCAGTTCTTCATGCAATCTTATGGGAACTTCGTCTGCAAGCTCTGGATACATGGCTTGGGGAGATAGTGGTAGTTCGAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCTTGAAGGTAGTTCTATGCAACTTTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAACCTGAAAATGGTTACTGGCCTACTGATTCTGTTGATCTTAATGCTCCTACCTTAGGGGATTTATCACCTTTAGAGGATTTTCGTGTTACTAGTCCTCCATTTCAGCAGAATACAATAAATGAAGCGAGACAAGAAGCTTCCAATGCATTTCCTTCAATGATAAGTGTTTCGGAAAATGTGGAAAGGCCTTTAAGAAACTTTGATAGGAGAATGACCCATCTACAGCATCAAGAATCTGTACCTTTCAATTTAACATCGACAAGGAGTGCTAGACATCATAATCATCCTTCTCCACATCAAATACCTGGCTCTCTCTCATTTAACGAGTCCTTGGATTTGAGGTTAACACCTGGAGTAACAGCAGCTAATTCAACTGGGCCTCAAAACCAATCACCTGCCATGCATATGCATCCTTTTTCGTGGAATAGAGCTGCTAATCCTAGAGTTTCCAGAACTTCAAGTTCTTATAACTCTGGAGAAAGAGCAGTTCGGGAAGATTTTAATTTACGACTCTTCCCGAGAGATAGTACCGAGCATCCCATGAATGTGCCTGCATCTTCAGGACATGAACCTACAGGTTGGCATACATCTTCTAGTAATGTGAACAATGTGGGAGGTATACCTCCTACACCCTGGATTGGATCTAGTACAAATGTCCACTCATTACCTAATCCCAGTTGGACTTTTAACCATGAAGTACCAACAGAAAATCTACACAGAGTTTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATCAGCTCAGCATCCGCTCATAGTGGCCAGCCTCCCTCTACTTCTGGACCTCTTTCATTTTCTCAGGGTTCTAGCAGCAATCAACCGTATCCAAGAGCATCGTATTTGATGGAAAGAAGGGGTGGCGGCGATGTTCTCCCTGCTCCTCATCCACTGCGAACATTAGCTGTTGATAATGATGGGAGACGCCGGCTCATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAGCTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCatgacagacacagagaaatgcgcctagatgttgataacatgtcttatgagGAATTGTTAGCATTGGAGGAGCGTATAGGAGATGTAAGCACTGGACTGAGTGAAGATATAATTCTTAAGTTGATGAAACAGCGATTTTATGTGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGCCAGGAGGAATATGCTGATGGACAGAATATTGGTTCACTAGATTGTGGTCATGAGTTCCACAGTAGCTGCATCAAGCAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACAGCCTTGCCGACGTGA 2097 0.4325 MQGQRRSTGSFPAIVSMMPGPSASGTDMNRQPSLNHVQNAVDFRLSDYRGSSGETACLRGAGPNASFSGWNTGEPSSGLNLINQVNDEGLKSEHRLCSSRGATSEDGLRPEERQLLGNQSRIHPSFLQGSSSTHTNQSINLGMGHNANSADRGKGKESGSGVNNSNPCGLDREKTSLGSSSCNLMGTSSASSGYMAWGDSGSSSSSLANWGPSCKRKALEGSSMQLCTGGSSSSLVQPENGYWPTDSVDLNAPTLGDLSPLEDFRVTSPPFQQNTINEARQEASNAFPSMISVSENVERPLRNFDRRMTHLQHQESVPFNLTSTRSARHHNHPSPHQIPGSLSFNESLDLRLTPGVTAANSTGPQNQSPAMHMHPFSWNRAANPRVSRTSSSYNSGERAVREDFNLRLFPRDSTEHPMNVPASSGHEPTGWHTSSSNVNNVGGIPPTPWIGSSTNVHSLPNPSWTFNHEVPTENLHRVSEFSPWSLFPSISSASAHSGQPPSTSGPLSFSQGSSSNQPYPRASYLMERRGGGDVLPAPHPLRTLAVDNDGRRRLISEIRQVLIAMRRGESLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIILKLMKQRFYVSLMTESSSDLEPCCICQEEYADGQNIGSLDCGHEFHSSCIKQWLMQKNLCPICKTTALPT 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01743 698 MobiDBLite consensus disorder prediction 411 435 - -
Car06g01743 698 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Car06g01743 698 SUPERFAMILY RING/U-box 632 695 - -
Car06g01743 698 Pfam Ring finger domain 651 692 IPR001841 -
Car06g01743 698 CDD RING-H2_TTC3 650 692 - -
Car06g01743 698 MobiDBLite consensus disorder prediction 123 174 - -
Car06g01743 698 SMART ring_2 651 691 IPR001841 -
Car06g01743 698 MobiDBLite consensus disorder prediction 158 174 - -
Car06g01743 698 MobiDBLite consensus disorder prediction 1 32 - -
Car06g01743 698 MobiDBLite consensus disorder prediction 123 145 - -
Car06g01743 698 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 697 - -
Car06g01743 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 697 IPR045191 GO:0061630
Car06g01743 698 MobiDBLite consensus disorder prediction 492 521 - -
Car06g01743 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 696 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01743 Car-Chr6 17263383 17268059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01743 70 698 C3H Transcription Factor Family AT2G15530 37.890 2.37e-107 340
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01743 06 17263383 17268059 Car06g01743 06 17263383 17268059 ECH
Car06g01743 06 17263383 17268059 Car08g00484 08 4069448 4072684 ECH
Car04g03424 04 62944611 62950726 Car06g01743 06 17263383 17268059 ECH