Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01597 ATGTTTGGTAACTGTGATGAGAAAACGGTAACTCCTAACAGATGGACACAGAGTGAGATAGATGATCATCATAAGGTTTCAATGGCATCAAATGGTAGTACTAGGGTTATGGAAAAACCAGGTCAAGATCTTGTACAACAGCAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAATAACTATAGCTTATCACAACCTAGACACTTTTGCAAAGCTTGTAAAAGATATTGGACAAGAGGTGGAACTCTTAGAAACGTTCCTGTTGGTGGTGGATGTAGAAAAAACAAACGTGTTAAGAGATCATCCACAACACACTCTTCCAACAATATTGATAATTCTACTAATACTATTGTTGCTTCTCCTTCTTCTTCTTCCAATCCTACTAGTGCTAATTCAAACCCTCCTTCTCAACTTCATAATTTTGATATTTCTAATTCTACCTCCAACCATATCAATACTTTGCTTTATGGTGGTGGTAATGGTAACTCTTGTCATGATGTCATGAATTTTCCTTTTTCAACAAGGTTCAATTCTAGAGTAGTTTCAAGTTCTTCTTCAGGGTATGATAATCTTCAGGTGAATAACTCTTGTCTTGGATTAGGATTTTCATCTGGGTTATTAATGTCTGGTTCTGGAGGAGAAGTTAATCATCATTATCATGATGCTGGTTATAACAGAAATGGGTTTAGTTCAAATAATAATAACAATCACACACTTGTTTCTAGTTACAATTCCATCTTTGGTTCTTCTTCAACTTCAACTAATTCCTTGGCTTCTACTCCAGTTATGACTTCTCTGCTTAGTTCTACACTATTGCAGCAAAAATTCATGAGTAGCACTGGTACTAGTAGTGGTGGAATGAAAGATGATATTTTTCATCATGAGATGAAAATGGAAGGAAATAGTAGTAGTGAGGTTGCAGGGATTATGGCTTCAAAAGAAGTGAAATTATGTGAAGGACAAAATAGGTTGCAGGAGTGGAATAATGTTAATGCTAATGGTGGTGTTGCTGTTGCTTTTCAAAACCAGATGGAGCATTTGGGTTTGTCTGATACTTCTTCTCTTTATTGGAATAATCATAACAGCAGCAACACAGCAACAGGTTTGGGTGTTTGGAGTGATCAACCTAATAATATTGGTCCTTCTGTTACTTCTCTGATCTAG 1191 0.3619 MFGNCDEKTVTPNRWTQSEIDDHHKVSMASNGSTRVMEKPGQDLVQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRSSTTHSSNNIDNSTNTIVASPSSSSNPTSANSNPPSQLHNFDISNSTSNHINTLLYGGGNGNSCHDVMNFPFSTRFNSRVVSSSSSGYDNLQVNNSCLGLGFSSGLLMSGSGGEVNHHYHDAGYNRNGFSSNNNNNHTLVSSYNSIFGSSSTSTNSLASTPVMTSLLSSTLLQQKFMSSTGTSSGGMKDDIFHHEMKMEGNSSSEVAGIMASKEVKLCEGQNRLQEWNNVNANGGVAVAFQNQMEHLGLSDTSSLYWNNHNSSNTATGLGVWSDQPNNIGPSVTSLI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01597 396 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Car06g01597 396 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 375 IPR045174 GO:0003700|GO:0006355
Car06g01597 396 MobiDBLite consensus disorder prediction 111 152 - -
Car06g01597 396 MobiDBLite consensus disorder prediction 97 152 - -
Car06g01597 396 Pfam Dof domain, zinc finger 50 106 IPR003851 GO:0003677|GO:0006355
Car06g01597 396 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Car06g01597 396 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 10 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01597 Car-Chr6 15750985 15753247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01597 1 109 C2C2-Dof Transcription Factor Family AT1G28310 63.063 2.79e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car06g01597 zf-Dof 4.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01597 - - cam:101512658 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01597 06 15750985 15753247 Car06g01597 06 15750985 15753247 ECH
Car06g01597 06 15750985 15753247 Car01g00332 01 2556323 2557609 PCT