Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01254 ATGAGAGAACCGTCGTCGGTGGGAGTCGAAAGTACCGGCGTCGTTTCATCGCCGCCTCAAGCGCTTCTCGAGAGACTCAAAGACTACGGTCAGGAAGACGTTTTCGCTCTATGGGACGAACTCTCCCATGAGGAACGCGACTTTCTCGTCAAGGACATTGAGAGTTTAGATATTTCGAGAATTGACCGGATTATTCGGTGTTCATTGCGATCTCAAGGGTTACCGGCAGCTGCCATTGAACCTGTGCCGGAGAGCAGTGTTTCGAAGTTGGAGGAGCGAAGTCAAGAGGAACGAGAGAGATGGTGGAAAAAGGGGTTGAAGGCTATTTCAGACGGCAAGTTAGCTGTTTTGCTTTTATCCGGTGGTCAGGGGACTAGGCTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCGCTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGTGCAGAGATTAGCTGCTCAAGCTACAAATGAGAGTTCTGCTTCTTCAGTGCAAATACACTGGTACATAATGACTAGTCCCTTCACTGATGAGGCAACACGCAAATTCTTTGAGAGTCACAAATTTTTTGGTCTTGAAGCAGAACAGGTTACATTTTTCCGGCAAGGGACCATTCCGTGTGTTTCCAAGGATGGTAGATTTATTATGGAGACTCCATATAGGGTTGCAAAAGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTTTGAAGTCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAACGCACTGGTTCGAGTTGCTGATCCATCTTTTTTAGGTTACTTTATTGATAAAGGCGTCGCTTCAGCAGCAAAAGTAGTGCGCAAGGCATATCCACAAGAAAAGGTTGGGGTGTTTGTACAGAGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGCGAGTTGGACCCATCACTAGCTTCCACAGTCAATCAAGCAACTGGCCGTCTTCGATTTTGTTGGAGTAACGTTTGCTTACACATGTTTACTTTGGATTTTCTAAACCAAGTGGCAAATGGCCTTGAAAAGGACAGCATTTACCACCTTGCAGAGAAGAAAATCCCTTCCATACATGGATATACTATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACCGCACTTTTTGAGGTATTACGGGAGGAGGAGTTTGCGCCTGTAAAAAATGCAAACGGCTCTAATTATGACACTCCAGATAGTGCTAAACTGCTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTGTCGAAGTGTCACCACTCTGTTCATATGTGGGTGAAAATCTGGAACCTATATGTCGAGGAAGAACATTTCACGCACCTTGTTGGTTACTCGGTGAATCAGGCAGAAAAAACGATTTTTCCAAATCCCATTTGGACGTGTTGGATATTTCTCGAGCACTGAGtaaagacataggaCCGATGTCATACGAATCAAACGTTAAGAGAAAGCCACGTAAACCTTCCATTAGCCACATCCAATCCCTCTTAAATCCACATTCTTACTACATCTCTTCTTCCATTCATCACCTTCCTCTGCTCTCAGAGGTTCCATTCACTCTCTCTTTTCTTTATCATCACATTTTCCTTCTAAGATGGCAGCATCATCAGCATGTCTTGTTGGGAATATTTTATCCACACATAGTAATAATAGAACTACTCTTGGCAACCTTAGACCAAAGTCAACAAGAAGGGAGAAGGGGGATTTTGAAATTGTTGCTTGGAAACGTCGGTGTCGGCTTACCTGCATTGTTGGGAAATGGAAAAGCTTATGCTGCTGATGAACAAGGTGCTTCCTCATCAAGAATGTCTTATTCAAGGTTTCTTGAGTATTTGGACAAGGACAGAGTTACCAAAGTCGATTTGTATGAGAATGGAACCATTGCTATTGTTGAGGCTGTTTCTCCTGAGTTGGGAAATCGGTTGCAGCGTGTTAGGGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAATTCAGGGAAAAGAACATAGATTTTGCAGCTCATAATGCTCAAGAAGATTCGGGTTCTCTTTTGTTTAACCTGATTGGGAATCTGGCTTTCCCTATTGCTGTCATTGGTGTATTGTTCCTTCTCTCGAGGCGATCTGGTGGGATGGGAGGTCCTGGTGGGCCTGGATTTCCTCTTGCCTTCGGTCAATCGAAAGCCAAGTTTCAAATGGAACCAAACACCGGAGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTCAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCGAAAGGAGTACTTCTTGTTGGCCCTCCAGGAACCGGAAAGACATTGTTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTTCCGTTTTTCTCTATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATCGGTGCTTCTCGTGTCCGTGATTTATTCAAAAAGGCCAAAGAGAATGCTCCTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGAAGACAAAGAGGGACAGGAATTGGTGGAGGGAATGATGAGAGAGAACAAACCCTCAATCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCCGACATTCTTGACTCTGCCTTATTGAGACCTGGCCGATTCGATAGACAGGTATCGGTTGATGTTCCAGATGTAAGGGGAAGGACTGAAATCCTAAAGGTTCATGCTAACAATAAAAAGTTCGATAACGATGTTTCTCTTGAAGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAATCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGAGGAAGGACAGGGATTTCATCTAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACATTAATGACTGATGGGAAGAGCAAAAGTTTGGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCTGGTCATGATGCTGTACAAAAGGTTACATTAATTCCTCGGGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTTCCGATGACCCGACTCTGATCTCAAAACAACAACTCTTTGCAAGAATTGTTGGAGGATTAGGTGGTAGGGCTGCAGAAGAAATTATTTTTGGTGAGCCTGAGGTTACAACTGGTGCAGCTGGTGATTTGCAGCAAATTACCGGTTTGGCAAGACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCATGGTCACTTATGGACGCATCAGCACAAGGTGGGGATGTTATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCAGAAGACATTGATACCGCTGTCAAGAGGTTATCAGATGAAGCATATGAAATTGCATTGACACATATAAAGAACAACCGTGAAGCAATTGATAAGATCGTGGAAGTCCTCCTCGAGAAGGAGACGTTGAGTGGAGATGAATTCCGCGCATTACTATCAGAGTTTGCTGAAATTCCAGCCGAAAACCGGGTTCTTCCTTCAACTCCATTACCAGTCGCCGCTTGA 3732 0.4362 MREPSSVGVESTGVVSSPPQALLERLKDYGQEDVFALWDELSHEERDFLVKDIESLDISRIDRIIRCSLRSQGLPAAAIEPVPESSVSKLEERSQEERERWWKKGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQATNESSASSVQIHWYIMTSPFTDEATRKFFESHKFFGLEAEQVTFFRQGTIPCVSKDGRFIMETPYRVAKAPDGNGGVYSALKSTKLLEDMASKGIKYIDCYGVDNALVRVADPSFLGYFIDKGVASAAKVVRKAYPQEKVGVFVQRGKGGPLTVVEYSELDPSLASTVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNYDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYVGENLEPICRGRTFHAPCWLLGESGRKNDFSKSHLDVLDISRALSKDIGPMSYESNVKRKPRKPSISHIQSLLNPHSYYISSSIHHLPLLSEVPFTLSFLYHHIFLLRWQHHQHVLLGIFYPHIVIIELLLATLDQSQQEGRRGILKLLLGNVGVGLPALLGNGKAYAADEQGASSSRMSYSRFLEYLDKDRVTKVDLYENGTIAIVEAVSPELGNRLQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPIAVIGVLFLLSRRSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHANNKKFDNDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTGISSKEIDDSIDRIVAGMEGTLMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLARQMVTTFGMSDIGPWSLMDASAQGGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALTHIKNNREAIDKIVEVLLEKETLSGDEFRALLSEFAEIPAENRVLPSTPLPVAA 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01254 1243 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 595 1233 - -
Car06g01254 1243 Gene3D - 768 950 IPR027417 -
Car06g01254 1243 SUPERFAMILY FtsH protease domain-like 1032 1228 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car06g01254 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1020 IPR027417 -
Car06g01254 1243 Pfam AAA+ lid domain 972 1015 IPR041569 -
Car06g01254 1243 CDD AAA 792 949 - -
Car06g01254 1243 Pfam ATPase family associated with various cellular activities (AAA) 817 948 IPR003959 GO:0005524|GO:0016887
Car06g01254 1243 ProSitePatterns AAA-protein family signature. 920 938 IPR003960 GO:0005524|GO:0016887
Car06g01254 1243 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 730 1221 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car06g01254 1243 CDD UDPGlcNAc_PPase 101 420 - -
Car06g01254 1243 PANTHER METALLOPROTEASE M41 FTSH 595 1233 - -
Car06g01254 1243 SMART AAA_5 813 952 IPR003593 -
Car06g01254 1243 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 15 484 IPR029044 -
Car06g01254 1243 Pfam UTP--glucose-1-phosphate uridylyltransferase 64 447 IPR002618 GO:0070569
Car06g01254 1243 Pfam Peptidase family M41 1031 1219 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car06g01254 1243 Pfam FtsH Extracellular 588 712 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Car06g01254 1243 Gene3D - 640 721 - -
Car06g01254 1243 Gene3D - 951 1026 - -
Car06g01254 1243 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 63 1232 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car06g01254 1243 Gene3D Peptidase M41 1028 1227 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car06g01254 1243 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 491 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01254 Car-Chr6 12404961 12420571 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01254 06 12404961 12420571 Car06g01254 06 12404961 12420571 ECH