Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01249 ATGGCGCCGAGTATTCAACTAACTTCCGTCGGCGCCGGCGACAACGATGACTCCGGCGACCTCGAAGATGTTCGTCTTCTGGATTCCTATGATAAACATGACGTTGACGATGGAATTAAACGGATTCAGGTTAGAATATCCGGCATGACCTGCGCCGCTTGCTCAAACTCCGTTGAGGCAGCTCTTAAGTCCGTTGATGGCGTAATTGAAGCCTCCGTTGCTTTGCTTCAGAATAAAGCCGACGTCGTTTTCAACAGAAACCTCGTCAAGGATGAAGATATTAAGAATGCAATCGAAGATGCAGGTTTCGAAGCTGAGATCTTACATGAACCCGGTTCACTTGGACCGAAACCGGTCGGGGAAAGTGCGGTAGTTGGACAGTTTACAATTGGTGGCATGACGTGTGCGGCATGTGTTAACTCCGTTGAGGGAATTTTGAAGAACATCTCCGGAGTGAAAAAAGCGGTGGTGGCTTTAGCTACTTCATTGGGTGAAGTTGAGTATGATCCAAACGTGATAAGCAAAGAAGATATTGTTACTGCAATTGAAGATGCTGGTTTTGAAGCTACTTTTGTTCAGAGTACTAGTCAAGACGAGATTGTTTTAGGGGTTATTGGTGTGTGTTCTTTGGTTGATGCTCGTGTTTTGGAAAATATGCTTAGTGGTATGAAAGGGGTTAGGCAGTTTCGGTTTGATCCTTTGATGAGTGAACTTAATGTTGTTTTTGACCCTCATGTTCTCAGTTCTAGATCATTGGTTGATGGGATCCGTGTTGTTAGTAATGGGAAATTTAAGTTGCATGTTAGAAGTCCTTATGCCAGAATGGCTTCTAAAGATGTTTCAGATAGTTCAACTATGTTTCGACTTTTTATTTCCAGCTTGCTTCTTAGTATTCCTCTATTCTTTATGGGGGTAATTTGTCCTCATATCCCATTTGTATACTCATTATTACTTTGGAGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAGTGGGCATTGGTGAGTGTCATCCAATTTGGGGTTGGAAAGCGCTTCTACGTAGCAGCTATCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCATCGTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTTACTGGATTTTGGTCTACAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGTCTAGCCAAGGGAAAAACGTCTGATGCCATTAAGAAGTTAGTAGAGCTCACTCCTGCAACAGCTTTACTGGTTGTTAAAGATAAAGATCTATTGAAGAAAGAAAATGATTCCTTGCTTATTCAACCAAGTGACACATTAAAAGTTCTTCTTAGTACTAAGATTCCTGTTGATGCCATTGTTACCCGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCTATACCTGTTTTGAAGGAGATCAATGCCTCTGTCATTGGAGGTACAATCAATTTGCATGGTGTCCTTCACATCCAAGCTACCAAAGTAGGATCCGATACAGTTTTGAGTCAGATAATTAATTTGGTGGAGACAGCACAGATGTCCAAGGCTCCCATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACAATTGTAGTTCTGTCATTATTGACACTATTGTGCTGGTATACTGCTGGGGCTCTTGGAGCTTACCCTGAAGAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCTATATCTGTTGTGGTGATTGCATGCCCATGCGCACTTGGTTTGGCTACTCCAACTGCTGTTATGGTGGCAACAGGGGTTGGGGCTAACAATGGTGTGTTAATTAAAGGAGGAGAATCCTTAGAAAGGGCTCAGATGGTGAAGTATGTTATATTTGATAAAACAGGAACTTTAACTCAGGGGAAAGCTACTGTCACTGTTGCCAAAGTGTTCGCAGGAATGGACCGAGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCGAGCAGTGAACACCCACTGGCAAAAGCGATATTACAATATGCACGCCATTTTCACTTCTTTGATGGGTCCTCTCTTACCAATGGTTCCCAAAATGATGCCAATGAGTTAAAATCAGGGTGGCTTTATGATGCCTCAGACTTCTCTGCTATTCCAGGACGGGGTGTGCAGTGCGTTATAGATGGAAAGCGTATTTTGGTTGGTAACAGGAAACTGCTGATGGAAAGTGGCATAAACATTTCTACTGAAGTGGAGAATTTTGTTGTAGAGCTTGAAGAAAGTGCCAGGACAGGGATCCTTGTAGCATGGGATGATATATTGATTGGAGTCTTGGGAGTTGCAGACTCACTTAAGCGAGAAGCTGCTGTTGTTATAGAGGGCCTCCAGAAAATGGGAATCACCCCTGTTATGGTTACAGGAGATAACTGGAGAACAGCGCGAGCTGTTGCCAAGGAGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAAGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATAAATGACTCTCCTGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGTGCTGGGACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGAGATAATTTGGAAGATGTTATCACAGCAATTGATCTTTCTAGGAAGACCTTCTCTCGTATTCGATTGAATTATGTATTTGCGATGGCCTACAATGTTATTGCTGTGCCAGTTGCTGCCGGGGTTTTATTTCCTTCACTGGGAATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCGTCTGTGAGTGTTGTATGTTCTTCTTTGCTTCTTAGAAGATATAGAAAACCCAGACTTACTACTATACTTGAGTTTGATATAGTTGTAAATTAA 2979 0.4246 MAPSIQLTSVGAGDNDDSGDLEDVRLLDSYDKHDVDDGIKRIQVRISGMTCAACSNSVEAALKSVDGVIEASVALLQNKADVVFNRNLVKDEDIKNAIEDAGFEAEILHEPGSLGPKPVGESAVVGQFTIGGMTCAACVNSVEGILKNISGVKKAVVALATSLGEVEYDPNVISKEDIVTAIEDAGFEATFVQSTSQDEIVLGVIGVCSLVDARVLENMLSGMKGVRQFRFDPLMSELNVVFDPHVLSSRSLVDGIRVVSNGKFKLHVRSPYARMASKDVSDSSTMFRLFISSLLLSIPLFFMGVICPHIPFVYSLLLWRCGPFLMGDWLKWALVSVIQFGVGKRFYVAAIRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSTTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKDLLKKENDSLLIQPSDTLKVLLSTKIPVDAIVTRGSSYVNESMVTGESIPVLKEINASVIGGTINLHGVLHIQATKVGSDTVLSQIINLVETAQMSKAPIQKFADYVASIFVPTIVVLSLLTLLCWYTAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGESLERAQMVKYVIFDKTGTLTQGKATVTVAKVFAGMDRGEFLKLVASAEASSEHPLAKAILQYARHFHFFDGSSLTNGSQNDANELKSGWLYDASDFSAIPGRGVQCVIDGKRILVGNRKLLMESGINISTEVENFVVELEESARTGILVAWDDILIGVLGVADSLKREAAVVIEGLQKMGITPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIAVPVAAGVLFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEFDIVVN 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01249 992 SFLD C1.7: P-type atpase like 626 916 - -
Car06g01249 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 646 652 IPR018303 -
Car06g01249 992 Gene3D - 611 921 IPR023214 -
Car06g01249 992 SUPERFAMILY Calcium ATPase, transduction domain A 449 530 IPR008250 -
Car06g01249 992 CDD P-type_ATPase_Cu-like 288 960 - -
Car06g01249 992 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 664 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g01249 992 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 728 947 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g01249 992 Gene3D - 39 110 - -
Car06g01249 992 SFLD p-type atpase 626 916 IPR044492 -
Car06g01249 992 Pfam E1-E2 ATPase 428 623 - -
Car06g01249 992 TIGRFAM TIGR00003: copper ion binding protein 127 189 IPR006122 GO:0005507
Car06g01249 992 TIGRFAM TIGR00003: copper ion binding protein 42 105 IPR006122 GO:0005507
Car06g01249 992 CDD HMA 43 106 IPR006121 GO:0046872
Car06g01249 992 PANTHER ATP7, ISOFORM B 9 984 - -
Car06g01249 992 Pfam haloacid dehalogenase-like hydrolase 640 878 - -
Car06g01249 992 PRINTS H+-transporting ATPase (proton pump) signature 864 880 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g01249 992 PRINTS H+-transporting ATPase (proton pump) signature 836 852 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g01249 992 PRINTS H+-transporting ATPase (proton pump) signature 895 920 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g01249 992 Gene3D - 415 534 - -
Car06g01249 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 380 953 IPR023298 -
Car06g01249 992 PRINTS P-type cation-transporting ATPase superfamily signature 789 800 - -
Car06g01249 992 PRINTS P-type cation-transporting ATPase superfamily signature 811 821 - -
Car06g01249 992 PRINTS P-type cation-transporting ATPase superfamily signature 887 899 - -
Car06g01249 992 PRINTS P-type cation-transporting ATPase superfamily signature 480 494 - -
Car06g01249 992 PRINTS P-type cation-transporting ATPase superfamily signature 644 658 - -
Car06g01249 992 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Car06g01249 992 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Car06g01249 992 SUPERFAMILY HMA, heavy metal-associated domain 125 194 IPR036163 GO:0046872
Car06g01249 992 SUPERFAMILY HMA, heavy metal-associated domain 36 110 IPR036163 GO:0046872
Car06g01249 992 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Car06g01249 992 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Car06g01249 992 PANTHER HEAVY METAL P-TYPE ATPASE 9 984 - -
Car06g01249 992 Gene3D - 126 191 - -
Car06g01249 992 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Car06g01249 992 Gene3D - 745 795 IPR023299 GO:0000166
Car06g01249 992 Gene3D - 651 744 IPR023299 GO:0000166
Car06g01249 992 SUPERFAMILY HAD-like 643 970 IPR036412 -
Car06g01249 992 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Car06g01249 992 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 361 973 IPR027256 GO:0006812|GO:0016021|GO:0019829
Car06g01249 992 ProSitePatterns Heavy-metal-associated domain. 46 76 IPR017969 GO:0046872
Car06g01249 992 CDD HMA 127 190 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01249 Car-Chr6 12348280 12353857 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01249 06 12348280 12353857 Car06g01249 06 12348280 12353857 ECH