Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01239 ATGAGTGGAGGGAAGAAGAAAAACATGGTTGTTTGGTTATACAAAGTGATAACAATCACCGTTACAGTAGCAAGTGTGGCGTTAACACTAACAGAAGCTCAAAAGGAGGCAGATTTCAAGTGCAGCTCAGAAATCGCCACGTGTCGTAGTCTAACCGACTACAAATCCCCTAACGTAACAACCCTGAAGGAAATCGAAACCCTGTTCGGCGTGAAACACTTCCTTGACCTCCTAGGCGCTAACAACTTCCCAAGCAACACCAAAGACAACTTCAAAGTGGAAGCCGACCAAGTCGTTAAAGTTCCGTTTCCGTGTAAATGCGGTAACGGAACAGGGACGTCGAACCAAATTCCGCGTTACAAAGTAAAACCGGGTGACACGTTGGACGGAATAGCGAGGAACCGTTTTGCGGGTTTGGTTAAGTATCAACAGATTCAAACCGCTAATAAGATCCCAGACGCTAATAATATAACCGCTGGTGAAACGCTTTGGATTCCTTTGCCGTGTAGCTGTGATAAGGTGGATGGGAGCAGTGTGATACACTATGCACACATTGTGGAAGCAGATAGTACTATTCAAGCCATTGCTCAACAATACGGTACCAATCAACAGACACTTCTGAAAATCAACGGTATTGATGACCCCAAATCCCTTCAAGCCGGTCAGCTTCTCGATGTTCCCCTTCCAGtttgtAACTCCAGTGTGACAAGTGATTCATTGGACTTCCCATTGCTTGTACCAAATGCTACTTATGTCTACACTGCAAATGAATGTGTTCAATGTAAATGCGACTCTACTAGTAACAACAACTTTATGTTACAGTGTGAGCCATCTGAACTAAAACCCATAAATCGTTGGTCCGTTTGTCCGACAATGGAATGTTCGAAGAATGTGTTAATTGGTAACACTACAACAACATCCACAGATTCGTGTAATAGCACGATTTGTGATTACGGTGGTTATAACTCCCGCAATATCTCTATGGTTAATGCAACCCAAAACACATGTGCTGTGGCACCAAGCGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTCGGGGGCAACTGGGAGCAGCTTGAGTGGCTCGGTCGTGTTCCTACATAA 1221 0.3931 MSGGKKKNMVVWLYKVITITVTVASVALTLTEAQKEADFKCSSEIATCRSLTDYKSPNVTTLKEIETLFGVKHFLDLLGANNFPSNTKDNFKVEADQVVKVPFPCKCGNGTGTSNQIPRYKVKPGDTLDGIARNRFAGLVKYQQIQTANKIPDANNITAGETLWIPLPCSCDKVDGSSVIHYAHIVEADSTIQAIAQQYGTNQQTLLKINGIDDPKSLQAGQLLDVPLPVCNSSVTSDSLDFPLLVPNATYVYTANECVQCKCDSTSNNNFMLQCEPSELKPINRWSVCPTMECSKNVLIGNTTTTSTDSCNSTICDYGGYNSRNISMVNATQNTCAVAPSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGGNWEQLEWLGRVPT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01239 406 SUPERFAMILY LysM domain 182 228 IPR036779 -
Car06g01239 406 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 25 336 - -
Car06g01239 406 Coils Coil 390 390 - -
Car06g01239 406 ProSiteProfiles LysM domain profile. 118 165 IPR018392 -
Car06g01239 406 SUPERFAMILY LysM domain 119 167 IPR036779 -
Car06g01239 406 Gene3D LysM domain 117 172 IPR036779 -
Car06g01239 406 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 25 336 - -
Car06g01239 406 Pfam LysM domain 120 166 IPR018392 -
Car06g01239 406 Pfam LysM domain 184 227 IPR018392 -
Car06g01239 406 CDD LysM 184 226 IPR018392 -
Car06g01239 406 SMART LysM_2 119 166 IPR018392 -
Car06g01239 406 SMART LysM_2 183 227 IPR018392 -
Car06g01239 406 CDD LysM 120 165 IPR018392 -
Car06g01239 406 Gene3D LysM domain 173 238 IPR036779 -
Car06g01239 406 ProSiteProfiles LysM domain profile. 182 226 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01239 17 326 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 45.192 7.09e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01239 - - cam:101506878 680.633