Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01200 ATGTTACATAACAACActgcaccttcttcttcttctgatcctgctgctgctgctTTTGCATTATCTGAAAATGGGGGTGCCAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCCGAGGTTGTGTCTCTTTCACCAAAAACATTGTTAGAATCAGACAGATATGTATGTGAGATCTGCAACCAAGGGTTTCAAAGAGACCAAAATCTTCAAATGCATAGAAGAAGACACAAAGTGCCATGGAAATTGCTGAAAAGGGAAACAACACAAGGGCAACAACAACAGAAGAAAAGGGTTTTTGTTTGTCCAGAACCAAGTTGTTTGCATCATGATCCTTGTCATGCTCTTGGTGATCTTGTTGGTATAAAGAAACATTTTAGAAGGAAACATAGTAATCATAAACAATGGGTTTGTGACAAATGCTCTAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACATGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCACTATCAGAAGGAAACACCAACACCAACACCAGCCAGAGTTACAAGCAACAACATTACAACCAGCTGCATGTTCTTCAGGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCTAATTTTAGTATAGCCCCATTACAAGGACTACCAGTACTTCCAAAACCACATGATAAACCAACTAATTCAGATATACACAACAAACCCTCCCTTCCTATTCATCACCATAACTTAGAACTTCAACTTTTACCTTCTTCTATTATAAAAACTCTACCAGAGAAACCAAATTCAAAGGACCAAAACTATGAAACACATTTGAAACTTTCAATAGGAAGTAATAATAATGAATTAGAGAAACAAATGAATAATGTTGTTGTCAATGATTCCACAGTTTCTAATTCCACATTGGAACTAGCAAGGTTGAAGGAGTTTAATAGTGAGGAACTAAAGTTGGCAAAGGCTGAAAAGGCTTATGCTGAAGAAGCTAGAAAAGAAGCTAAACGTCAAATTGAGATAGCTGAAGTTGAGTTTGAGAATGCTAAAAGGATAAGGAAACAAGCACAAGATGAGCTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTGTTAAGAAGATAAGTAACACTGTTATGGAAATAACTTGCCAAGCTTGTAAACAACAGTTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCCATTGTTATGGGTTACATGTCGTCCGCCACCACAGAAGGTGAAGCAGAATAG 1311 0.3661 MLHNNTAPSSSSDPAAAAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGQQQQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRRKHQHQHQPELQATTLQPAACSSGTASSTSPSSEANFSIAPLQGLPVLPKPHDKPTNSDIHNKPSLPIHHHNLELQLLPSSIIKTLPEKPNSKDQNYETHLKLSIGSNNNELEKQMNNVVVNDSTVSNSTLELARLKEFNSEELKLAKAEKAYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01200 436 Gene3D Classic Zinc Finger 37 107 - -
Car06g01200 436 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Car06g01200 436 MobiDBLite consensus disorder prediction 1 46 - -
Car06g01200 436 MobiDBLite consensus disorder prediction 234 257 - -
Car06g01200 436 SUPERFAMILY beta-beta-alpha zinc fingers 58 160 IPR036236 -
Car06g01200 436 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Car06g01200 436 Coils Coil 330 390 - -
Car06g01200 436 MobiDBLite consensus disorder prediction 208 227 - -
Car06g01200 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Car06g01200 436 PANTHER OS03G0310200 PROTEIN 1 436 IPR039288 GO:0009630
Car06g01200 436 SMART c2h2final6 59 81 IPR013087 -
Car06g01200 436 SMART c2h2final6 140 167 IPR013087 -
Car06g01200 436 SMART c2h2final6 104 134 IPR013087 -
Car06g01200 436 MobiDBLite consensus disorder prediction 1 17 - -
Car06g01200 436 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01200 Car-Chr6 11798748 11801849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01200 20 436 C2H2 Transcription Factor Family AT2G01940 54.483 1.74e-151 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g01200 zf-C2H2 0.0041 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01200 06 11798748 11801849 Car06g01200 06 11798748 11801849 ECH