Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01163 ATGAAGAGAGAGCATAAACACGAAAATGAAGACATGAGTGGTAGTGGGAGTGGAAAATCAGGGGTTTGCTGGGAAGACGACGGTGGTATGGATGAGCTTTTAGCGGTGGTTGGTTACAAGGTGAAATCCTCCGACATGGCTGAAGTTGCTCAAAAACTTGAACAACTTGAACACGCCATGGGGAATTTCCAAGACCAAGATGAAGCAATTATCGCTCAACAACTCTCAAACGACACCGTTCATTACAATCCTTCAGATATTTCTAACTGGCTTAAAACAATGCTTTCCAATTTTGACCCTCAACCTCAAAACCCTTCGGTTTCATCTTCATCTGATAATGACCTAAACGCCATTCCAGGTAAAGCGATCTACGctaccacaactacaactacaacaactactactgactCAGATGAATCTCTTCCTTCCAGTAAACGACTCAAACGAACTTCAACTGACTCAACTCGTTCCGTTGTTATGGTTGTTGAAACGCAAGAAAAAGGGATCCGTCTTGTTCATACTTTGATGGCTTGTGCTGAAGCGGTTGAACAGAGTAATCTAACCGTAGCTGAGGCTCTGGTCAAACAGATCGGTTACTTAGCGGTTTCACAAGAAGGTGCTATGAGAAAAGTTGCTACCTATTTCGCTGAAGGTCTCGCTAGGCGAATCTATGGTGTTTTTCCTCAACATTCGGTTTCCGATTCGCTTCAGATCCATTTCTATGAAACTTGTCCTTATCTTAAATTCGCTCATTTCACTGCCAATCAAGCTATTCTTGAAGCTTTTCAAGGGAAATCTCGTGTTCATGTCATTGATTTCTCGATTAATCAAGGGATGCAGTGGCCGGCTCTTATGCAGGCGCTTGCGTTGCGTCCTGGTGGTCCTCCTGCTTTTCGTCTCACCGGAATTGGACCTCCGGCGTCTGATAACTCCGATCATCTTCAACAGGTTGGTTGGAAGCTTGCTCAGTTTGCACAGACTATTCATGTTCAGTTTGAGTATCGCGGTTTTGTTGCTAACAGTTTAGCTGATCTTGATGCTTCCATGCTTGAACTCCGGTCACCGAAGACGGAGTCTGTTGCAGTTAACTCTGTTTTTGAGCTTCATAAACTCAACGCGCGTCCCGGCGCGCTTGAGAAGGTTTTTTCTGTTATCCGTCAGATTCGGCCGGAGATTGTTACCGTTGTTGAGCAGGAAGCGAATCACAACGGACCGGCTTTTCTTGACCGGTTTACTGAGTCGCTTCACTATTACTCGACGCTGTTTGACTCGTTGGAAGGTTCATCGGTTGAACAGCAGGAAAAGGCTATGTCGGAGATGTATTTAGGGAAGCAAATATGTAACGTGGTGGCGTGTGAAGGAACGGACCGAGTTGAGCGTCATGAGACTTTGAACCAGTGGAGGAACcggttcggttcggctgggttttctccggttcatttaggttcCAACGCGTTTAAGCAAGCGAGTATGTTGTTGGCACTTTTCGCCGGTGGGGATGGTTACAAGGTGGAAGAAAATGATGGGTGTCTCATGCTTGGTTGGCACACTAGGCCTTTGATTGCTACTTCTGCGTGGAAACTCGCCGCTAACTCAGTGGTGGTTTCTCACTGA 1614 0.438 MKREHKHENEDMSGSGSGKSGVCWEDDGGMDELLAVVGYKVKSSDMAEVAQKLEQLEHAMGNFQDQDEAIIAQQLSNDTVHYNPSDISNWLKTMLSNFDPQPQNPSVSSSSDNDLNAIPGKAIYATTTTTTTTTTDSDESLPSSKRLKRTSTDSTRSVVMVVETQEKGIRLVHTLMACAEAVEQSNLTVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYGVFPQHSVSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVIDFSINQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQQVGWKLAQFAQTIHVQFEYRGFVANSLADLDASMLELRSPKTESVAVNSVFELHKLNARPGALEKVFSVIRQIRPEIVTVVEQEANHNGPAFLDRFTESLHYYSTLFDSLEGSSVEQQEKAMSEMYLGKQICNVVACEGTDRVERHETLNQWRNRFGSAGFSPVHLGSNAFKQASMLLALFAGGDGYKVEENDGCLMLGWHTRPLIATSAWKLAANSVVVSH 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01163 537 MobiDBLite consensus disorder prediction 1 24 - -
Car06g01163 537 MobiDBLite consensus disorder prediction 129 152 - -
Car06g01163 537 Pfam Transcriptional regulator DELLA protein N terminal 31 102 IPR021914 -
Car06g01163 537 Pfam GRAS domain family 171 527 IPR005202 -
Car06g01163 537 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 158 528 IPR005202 -
Car06g01163 537 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 133 IPR005202 -
Car06g01163 537 SMART DELLA_2 31 108 - -
Car06g01163 537 MobiDBLite consensus disorder prediction 96 115 - -
Car06g01163 537 Gene3D - 29 98 IPR038088 -
Car06g01163 537 Coils Coil 46 66 - -
Car06g01163 537 ProSiteProfiles GRAS family profile. 162 527 IPR005202 -
Car06g01163 537 PANTHER DELLA PROTEIN GAI1-RELATED 12 133 IPR030006 GO:0003712|GO:0005634
Car06g01163 537 PANTHER DELLA PROTEIN GAI1-RELATED 158 528 IPR030006 GO:0003712|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01163 Car-Chr6 11431675 11434275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01163 25 531 GRAS Transcription Factor Family AT1G14920 68.952 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car06g01163 GRAS 2.1e-137 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01163 06 11431675 11434275 Car06g01163 06 11431675 11434275 ECH