Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00200 ATGAATCCATCACCTCTACTTATATCACAAAAGCATACTTTCCATGCCTCAGTTGTGCCAATGGCAATGCCATCCTCTCCCCACTATCATCAAACTGCTCTCCGCCTCATGTGCAGCTACGGCGGCCACATAACCCACCACGACAACAACTCCCTCTTCTACAACGGCGGCGACACTCGCATTGTCGCCGTCGACCGCCACACTTCCTTAAAAAACCTCTGTTCTCATCTCTCTCGCTGTCTCCTTCATGAAACAAAACCTTTCACTCTGAAATACCATCTTCCCAATGAAGACCTCGACAACCTCATAACTGTCTCCACTGATGAAGACCTTCAGAACATGATCGATGAGTATGATCGTTTGGCTTCAAACCCTTCTCCTTCCCCTTCTCGACTCAGAATGTTTCTGTTTTTCTGTAAACCAGTTACTGCTGTTTCCATGGACACGCTTCATCTCGATGATCATGATATGTGGTTCGTCGAAGCTCTCAACAACTCAGGGATTCTCTCTCGTGTTGTTTCTGATTCTGCTGCTGTGGATAATTGCCTCCTTAAccttcatgataatgatgatgatgatgatgatgttagtgccgctgctggcatcagtttgccttcTCCAGATTCACTTGCAAGTGAAAGCAGTAATGAATCTGCAAATTCTCACTCAAAAACTGTTGTTTACTGTCAAGATCTTGGCCAAGCTGAACAACATGTGGACAATAAAGGTACCACTTTGCCAAATAACATCAAAAGTGAAGCATCTAATCAAAATCAACAACATCAATTTGACTATGTTCACCGTCCTATAGGTACAGGTCAACTACCAATCTCATCCTACTACCCCATTTATACCCCACAATCACATCAACATCTTCATCAGTACCCAGTTTATGTAATGCCTATTGGACTTGGACACAATTTACAATCCAGTATAACTTATCCAAAGGTCACTCCAAGTGTTTATAAAGCTTCAAATATTGCTAATTTTATTCAAATACCACAGCCAATTCCTATATCTCCCTCTACCATGAATAATTATGGTTATGAATATGGTGGATCTATGCAAGATCAAGTATACTACACACAACAGCAGCATGCAACTGCACCACCTCAGTACCACTCAATGACCCCTTTATCAGATGTTTCAAAACAGTTTGCTATTGACAACATCCAGCAACAAAACAACACTTCATAG 1197 0.3968 MNPSPLLISQKHTFHASVVPMAMPSSPHYHQTALRLMCSYGGHITHHDNNSLFYNGGDTRIVAVDRHTSLKNLCSHLSRCLLHETKPFTLKYHLPNEDLDNLITVSTDEDLQNMIDEYDRLASNPSPSPSRLRMFLFFCKPVTAVSMDTLHLDDHDMWFVEALNNSGILSRVVSDSAAVDNCLLNLHDNDDDDDDVSAAAGISLPSPDSLASESSNESANSHSKTVVYCQDLGQAEQHVDNKGTTLPNNIKSEASNQNQQHQFDYVHRPIGTGQLPISSYYPIYTPQSHQHLHQYPVYVMPIGLGHNLQSSITYPKVTPSVYKASNIANFIQIPQPIPISPSTMNNYGYEYGGSMQDQVYYTQQQHATAPPQYHSMTPLSDVSKQFAIDNIQQQNNTS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00200 398 CDD PB1_UP2 37 137 - -
Car06g00200 398 ProSiteProfiles PB1 domain profile. 48 139 IPR000270 GO:0005515
Car06g00200 398 PANTHER OS05G0427100 PROTEIN-RELATED 199 309 - -
Car06g00200 398 PANTHER OS05G0427100 PROTEIN-RELATED 330 394 - -
Car06g00200 398 PANTHER OS05G0427100 PROTEIN-RELATED 24 190 - -
Car06g00200 398 MobiDBLite consensus disorder prediction 207 223 - -
Car06g00200 398 MobiDBLite consensus disorder prediction 195 223 - -
Car06g00200 398 Pfam PB1 domain 53 137 IPR000270 GO:0005515
Car06g00200 398 Gene3D - 53 138 - -
Car06g00200 398 SMART PB1_new 33 137 IPR000270 GO:0005515
Car06g00200 398 MobiDBLite consensus disorder prediction 239 258 - -
Car06g00200 398 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 24 190 - -
Car06g00200 398 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 199 309 - -
Car06g00200 398 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 330 394 - -
Car06g00200 398 SUPERFAMILY CAD & PB1 domains 50 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00200 Car-Chr6 2178390 2179675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00200 34 137 MAP Kinase Kinase Kinase AT3G46920 36.190 2.13e-17 82.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01660 08 26452773 26456207 Car06g00200 06 2178390 2179675 ECH
Car06g01491 06 14529816 14531576 Car06g00200 06 2178390 2179675 ECH
Car06g00200 06 2178390 2179675 Car06g00200 06 2178390 2179675 ECH