Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00048 ATGGCTACTGGTGAGGTTATTAATAAACCTCTTTCAATTCCTTCATACCCTGAGATGATTTTGAGGGCAATAGAAGCATTAAACGAAGAAAATGGTTCAAACAAATCCTCAATATCAAAGTACATAGAATCCACATATGGTGGGTTGCCTCATGGACACAGGGCACTACTCAACTTGCACCTTGCAAGAATGAGGGACAGTGGTGAATTAGTATTTTGGAAAAACAACTACACCAAGCGTGACCTCAATGCTCCACCGAGACGGGGCCGTGGAAGGCCACCCAAGTCCAAGGAACCTTTTCAGTCGGGCACCATCTACTCGCCGCCTAAGCCCAAAGGTCGTCCACCAAATGTCACATCAGGGCCAATGAAAGTTAAGGCCTCAGTGGGGAGTGGACGACCTAGAGGTCGGCCTAGAAAGATGTCTCAGCCGACTGGAGGATTTGGTGGAGCATTGCCTGTGGCTACGGGGACAGGTGGTAGTGGGAGGCTTAGAGGTAGGCCTCCCAAGACAAAGCCCCCATCATTTTCAGATACTGTTGCTTAA 546 0.4872 MATGEVINKPLSIPSYPEMILRAIEALNEENGSNKSSISKYIESTYGGLPHGHRALLNLHLARMRDSGELVFWKNNYTKRDLNAPPRRGRGRPPKSKEPFQSGTIYSPPKPKGRPPNVTSGPMKVKASVGSGRPRGRPRKMSQPTGGFGGALPVATGTGGSGRLRGRPPKTKPPSFSDTVA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00048 181 PANTHER HMG-Y-RELATED PROTEIN A 1 176 IPR031059 GO:0003677|GO:0005634
Car06g00048 181 MobiDBLite consensus disorder prediction 80 181 - -
Car06g00048 181 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Car06g00048 181 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Car06g00048 181 MobiDBLite consensus disorder prediction 81 95 - -
Car06g00048 181 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Car06g00048 181 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Car06g00048 181 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Car06g00048 181 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Car06g00048 181 Gene3D - 9 90 IPR036388 -
Car06g00048 181 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Car06g00048 181 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Car06g00048 181 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Car06g00048 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car06g00048 181 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car06g00048 181 PANTHER HISTONE H1 1 176 - -
Car06g00048 181 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Car06g00048 181 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00048 Car-Chr6 614846 616345 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00048 06 614846 616345 Car06g00048 06 614846 616345 ECH