Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03409 ATGAAGATCCAATGTGATGTGTGTGAGAAAGTTCAAGCCTCTTTGTTTTGTCCTTCAGATGAAGCTGCTCTTTGCCATGGATGTGACCTTTCCATCCACCATGCCAATAAGCTTGCAACCAAACACACACGTTTCTCTCTCATTCACCTTCACTCCAAAGAATTCCCTCTTTGTGATATCTGTCAAGAGAAGCGTGGATATGTATTTTGCCAAGAAGACAGAGCGATAGTTTGCAGAGAATGTGACCTTTCAATTCACAGAGCAAATGAACATACAGAGAAACATAACAGGTTTCTTCTAAGTGGCGTGAAGCTTTCAAGCAATTCTTTGGATCCAGAATCATCATCATCAACAAATATAATAGAGAGATCGGTTTCGAATGAAAATGGGAGTAGTTATGGTAACAAGGTTGAAGAGAACATGGGTAGTGAGAGTGGTTCAGTATCAACAAGCAGCATTTCAGAGTATTTGATAGAAACAATACCTGGTTACTGTTTTGAAGATTTTCTCGATGCTTCTTTTGCTCCTAATGCTTTCTGTAAGAATAACTGTTCGGAATTTAAGGACCAAGATATTCATGTTAGCAAGTATTTGTTTCCTCAAGTAACGTGTGTACCTTTAGCTCAGGTTCAATCAACTCAACTAACTAATCCTATTCCTTTGAATCTTCCTCGGATTGATTCAACGGTTGGAGTTAAAGAAATTCCAGGGAAATCTAGACACTCTCGATAA 732 0.3866 MKIQCDVCEKVQASLFCPSDEAALCHGCDLSIHHANKLATKHTRFSLIHLHSKEFPLCDICQEKRGYVFCQEDRAIVCRECDLSIHRANEHTEKHNRFLLSGVKLSSNSLDPESSSSTNIIERSVSNENGSSYGNKVEENMGSESGSVSTSSISEYLIETIPGYCFEDFLDASFAPNAFCKNNCSEFKDQDIHVSKYLFPQVTCVPLAQVQSTQLTNPIPLNLPRIDSTVGVKEIPGKSRHSR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03409 243 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Car05g03409 243 Gene3D Classic Zinc Finger 1 96 - -
Car05g03409 243 SMART bboxneu5 53 100 IPR000315 GO:0008270
Car05g03409 243 SMART bboxneu5 4 47 IPR000315 GO:0008270
Car05g03409 243 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Car05g03409 243 CDD Bbox1_BBX-like 57 100 - -
Car05g03409 243 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car05g03409 243 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 188 - -
Car05g03409 243 MobiDBLite consensus disorder prediction 126 146 - -
Car05g03409 243 CDD Bbox1_BBX-like 5 47 - -
Car05g03409 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03409 Car-Chr5 78605769 78607813 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Car05g03409 zf-B_box 6.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03409 05 78605769 78607813 Car05g03409 05 78605769 78607813 ECH
Car04g03556 04 64720927 64722514 Car05g03409 05 78605769 78607813 PCT