Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03288 ATGATTGATTCCGTTCTTTTGGCGCTTTTTCTTCCTTGTATAGGCATGAGTGCTATCTTCGCTCTCTATATGTGCCTTCTCTGCTACGCCACTTCACATCACCGTTCTGATTTAAATCCACCGTTGAAACCGGTCACTGAAAAAGGTCTTTCTCCTTTGGAACTTGAACACCTTCCCAAAATTACCGGTAAAGAATTGGTTGCGTCCACCGAATGCGCCGTTTGCCTCGATGAAATCGTTAATGAACAACCGGCTCGTCTGGTTCCCGGTTGTAACCATGCCTTTCATCTTCAATGTGCTGACACGTGGCTTTCCAAACACCCGTTCTGTCCTCTTTGTAGAACCAAGCTCGACCATCAGATTCTCAACTCTGATAGTCCATGCTGA 387 0.4599 MIDSVLLALFLPCIGMSAIFALYMCLLCYATSHHRSDLNPPLKPVTEKGLSPLELEHLPKITGKELVASTECAVCLDEIVNEQPARLVPGCNHAFHLQCADTWLSKHPFCPLCRTKLDHQILNSDSPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03288 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 125 - -
Car05g03288 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 123 IPR013083 -
Car05g03288 128 SMART ring_2 72 113 IPR001841 -
Car05g03288 128 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Car05g03288 128 Pfam Ring finger domain 71 114 IPR001841 -
Car05g03288 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 125 - -
Car05g03288 128 SUPERFAMILY RING/U-box 71 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03288 Car-Chr5 77602361 77603300 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03288 05 77602361 77603300 Car05g03288 05 77602361 77603300 ECH
Car04g03610 04 65556189 65557543 Car05g03288 05 77602361 77603300 PCT