Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03284 ATGGTTACTCACACAGCTGACTCTTCCTCTAATCACCACTCGCCAACCACTACTAATGCTGCCGCCATCAATAACCCTAATTACCCGCGAAAAAACTTACCTTCTCCGTGGATCAAGGTTGTTCGCGGTGCTGATTCCGAACCACTCAACCACCCATCGCCGCCATCGTCTTCTTCTTCGTCATCCATTGATTCTGGCAATTCCGATGCCGCCGCCGCTGCGTCTGCCGTAGATAACTCAAATGCTGACAAGAATAACAATGCGTGTAACCCTAAAAACGCTTGGAAGAATCCATCTAATGGTATTTCTGATGTGAGTCCTGTAATGGGTGCTGTTTCTTGGCCCGCTTTATCTGCTAAGCCTACTGTTAAATTGTCATCTGATTCCTCTTCCGCCATTGACGGATCAATCTCCATTCCTCAGGGGTCTATTACTTCACATTCCCCTCAGAAACatgctaatgcaaatgttactgttgatgctaatgTGAAACCTACTCCTCCAATAAACTGCGGTGTGGGTAATAATAGACAAAGATCGACGAGGCGGGGAGGAGGAAACGGCGATAGCAATACGGGTCCTTCCAACCCCGTTCACTCTAATCTTCAACAATCGGCTGCTCCACCTTTTCCAGTGCTTCAGATCCCTACTACCACCTCTCCTGACGGGATTCATCTGTACAGGAACAATAATGGCTGGAGTCCAAGGTCACCTGTTGGGGTTTATGTGCCGCCGGTCAATGAACACAGGAGTCCCTCTCACAGGGGTAATCATGGGAACCGTCCCCATAACAATTACGGCGTCAGACGCAATCAGGGTCCGGGAAATTTAGTAAACACTAGAGATCCTCCTCATCTACACCAGAGAATGCATTCAAGCGGATTTCTGACACCGACATTGCCGAATTCTGCCTCATATTTAGGACATCAGTCTTTGAGGCCATTTGTAAATCAGGCTGGGTTTCATGAATTCTGTTATTATCCAACATTGCCGTTTGAACCCTTTGGAGGAATGCCATTCTTGACCCATCCACCTCCTCCCGCGATGTTCTTCCCGGTTGCAGAAACTCAACTGATCAATTCAATACTTAATCAAGTTGATTATTATTTTAGCGATGCTAATCTAGTAAAAGACGACTTTCTGAGATCCAACATGGACGAATGCGGCTGGGTTTCAATTAGCTTGATTGCAAACTTCCCACGGGTTAAGAATTTGACTAACAACATTGAATTAATATTGGAGTCACTGAGAACTTCGTTAGTCGTGGAAGTACAGGGCGACAAACTGAGGAGGCGCAATGAGTGGATGAGGTGGCTACCCTCTGCTCATCGACGTGGTTCTGGTTCAATATCACCCATTGGATCAAGTTGCAATAATAACATAGCTGCTGATTTTGATAAGATCACCATTGACGAAGCAACTACCACAAATGGCGAGTCTACATGA 1446 0.453 MVTHTADSSSNHHSPTTTNAAAINNPNYPRKNLPSPWIKVVRGADSEPLNHPSPPSSSSSSSIDSGNSDAAAAASAVDNSNADKNNNACNPKNAWKNPSNGISDVSPVMGAVSWPALSAKPTVKLSSDSSSAIDGSISIPQGSITSHSPQKHANANVTVDANVKPTPPINCGVGNNRQRSTRRGGGNGDSNTGPSNPVHSNLQQSAAPPFPVLQIPTTTSPDGIHLYRNNNGWSPRSPVGVYVPPVNEHRSPSHRGNHGNRPHNNYGVRRNQGPGNLVNTRDPPHLHQRMHSSGFLTPTLPNSASYLGHQSLRPFVNQAGFHEFCYYPTLPFEPFGGMPFLTHPPPPAMFFPVAETQLINSILNQVDYYFSDANLVKDDFLRSNMDECGWVSISLIANFPRVKNLTNNIELILESLRTSLVVEVQGDKLRRRNEWMRWLPSAHRRGSGSISPIGSSCNNNIAADFDKITIDEATTTNGEST 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03284 481 ProSiteProfiles La-type HTH domain profile. 352 441 IPR006630 -
Car05g03284 481 MobiDBLite consensus disorder prediction 1 101 - -
Car05g03284 481 Pfam La domain 362 417 IPR006630 -
Car05g03284 481 SUPERFAMILY "Winged helix" DNA-binding domain 349 440 IPR036390 -
Car05g03284 481 MobiDBLite consensus disorder prediction 160 236 - -
Car05g03284 481 Gene3D - 351 441 IPR036388 -
Car05g03284 481 SMART la 356 434 IPR006630 -
Car05g03284 481 PANTHER LA-RELATED PROTEIN 1B 8 477 - -
Car05g03284 481 PANTHER LUPUS LA PROTEIN-RELATED 8 477 IPR045180 -
Car05g03284 481 MobiDBLite consensus disorder prediction 1 31 - -
Car05g03284 481 MobiDBLite consensus disorder prediction 160 271 - -
Car05g03284 481 CDD LAM 359 432 - -
Car05g03284 481 MobiDBLite consensus disorder prediction 50 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03284 Car-Chr5 77578462 77581973 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03284 05 77578462 77581973 Car05g03284 05 77578462 77581973 ECH
Car04g03604 04 65496872 65501004 Car05g03284 05 77578462 77581973 PCT