Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03232 ATGTCAAACTCAATGACCCATCAAAATCAATTTGAGAACCACCAAGAGCTAATAAGTTGTTATGGTTCTTCTTCTTTGAGAAACAACAACAATGCAGCATATCCTCACGAAACACTAACATATCCTAACATTGAATCAATTGGAGACAGAATAATATCAAGAACAGTGAACCTAGTGCAAGGTTCTGAATCTGAAATGAGCCACACAAGACATTTGATGGATCTTTTAGGCGCAGCAAACGAGAACAATCACCAGCAACAAGGCCTATCCCTTTCATTAAACTCTCACATGTTTGTTGATGAATACAACAGACACCGTTCCTTAAATCAAGCTCTCATCAACCCAAGTTACTTCATGTCACAACCACAAGAGACAACAAGGGATGAAACTTGTAATCATCAACCTGTTGAGAATTTAACAAGTGACTATTTTTTCAGTGGTGGAAATTTTCCATCTTCTTCTAATAACAACAACTCAATATTGAACAACCGTTCTCCTTCCACTTCTTATGGACCTGAGTCTTTTGCTGCTATTATTGGAAACTCTAGATACCTCAAACCTGTACAGTCACTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAACGAAAAGTATGCTGAGAAGTTGTTTCATGGGAGTAGAACAGGTGCCAGGACACTGTCCTCAGAGCTTAAAGCTGAGTTGAGGAATAATGGACATTTATTGGCTGATAAACATGAACATCAAATCAAAATTGCAAAGTTGATTGCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTAGTGTCATCTTTTGAAATGATAGCAGGTCTAGGAGCTGCAAAATGTTACACTGCTTTGGCACTTCAAGCTATGTCTAGACATTTTTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTTGAGAAAAGAAAACTGTTTCAAGATTTACCTAAAATCAATAATGGATTATCTCAACTTAGCTTATTTGAGAGAGATAGTAGACAGAATAGAATGTCTCTTCAACAACTTGGAGTTATTCAAAACCAAAGGCAAGTATGGAGACCTATTAGAGGGTTGCCTGAAACCTCTGTTGCAATTCTTCGTGCTTGGCTCTTTGAACACTTTCTTCACCCCTATCCTAATGATTCAGAGAAGTTAATGCTGGCTTCCCAAACAGGTTTAACTAAAAATCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGTTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCTTCTGAAGATTCCAACCCACCTGCGAACAATTTTATGTCAAGGGATGATGTCACAGATTGTGTGGAGGACTGA 1374 0.3741 MSNSMTHQNQFENHQELISCYGSSSLRNNNNAAYPHETLTYPNIESIGDRIISRTVNLVQGSESEMSHTRHLMDLLGAANENNHQQQGLSLSLNSHMFVDEYNRHRSLNQALINPSYFMSQPQETTRDETCNHQPVENLTSDYFFSGGNFPSSSNNNNSILNNRSPSTSYGPESFAAIIGNSRYLKPVQSLLEDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRNNGHLLADKHEHQIKIAKLIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDLPKINNGLSQLSLFERDSRQNRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPANNFMSRDDVTDCVED 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03232 457 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 439 - -
Car05g03232 457 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 4 439 - -
Car05g03232 457 SMART HOX_1 361 425 IPR001356 GO:0003677
Car05g03232 457 CDD homeodomain 361 422 IPR001356 GO:0003677
Car05g03232 457 Pfam Associated with HOX 179 310 IPR006563 -
Car05g03232 457 Coils Coil 243 270 - -
Car05g03232 457 Pfam Homeobox KN domain 378 417 IPR008422 GO:0003677|GO:0006355
Car05g03232 457 ProSiteProfiles 'Homeobox' domain profile. 380 421 IPR001356 GO:0003677
Car05g03232 457 SUPERFAMILY Homeodomain-like 367 429 IPR009057 -
Car05g03232 457 SMART prehox3 173 311 IPR006563 -
Car05g03232 457 MobiDBLite consensus disorder prediction 430 457 - -
Car05g03232 457 Gene3D - 356 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03232 Car-Chr5 77072644 77075962 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Car05g03232 POX 4.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03232 05 77072644 77075962 Car05g03232 05 77072644 77075962 ECH
Car05g03232 05 77072644 77075962 Car04g03547 04 64619106 64622777 PCT