Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03197 ATGGCGTCGAGCTCGAATTGGACCCCGAAACAAAACAAAAGATTTGAGAATGCATTGGCAATCTTGGACAAAGACATTCCAGATCGTTGGCAGAAGCTGGCTAGAGCTGTGGGAGGGAAGAGTGTTGAAGAAGTGATAAGACATTATGAGAAGCTTGTTGAAGATGTGAAGCTGATTGAAGAAGGACTTGTTCCTTTGCCTAATTACAGAAATAATGTTGGCAGCAACAAAGGTTACACTTACATAATGGATGAAGACAAAAGGATGAAGGCTCTAAGTCTCCAATGA 288 0.4167 MASSSNWTPKQNKRFENALAILDKDIPDRWQKLARAVGGKSVEEVIRHYEKLVEDVKLIEEGLVPLPNYRNNVGSNKGYTYIMDEDKRMKALSLQ 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03197 95 SMART sant 3 55 IPR001005 -
Car05g03197 95 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 95 IPR044636 GO:0003700
Car05g03197 95 CDD SANT 6 53 IPR001005 -
Car05g03197 95 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Car05g03197 95 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 95 - -
Car05g03197 95 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Car05g03197 95 Gene3D - 1 66 - -
Car05g03197 95 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03197 Car-Chr5 76818248 76818783 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g03197 Myb_DNA-binding 1.3e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03197 05 76818248 76818783 Car05g03197 05 76818248 76818783 ECH
Car04g03515 04 64348439 64349474 Car05g03197 05 76818248 76818783 PCT