LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02799	ATGGCTTTTGCCGGAACAACTCAGAAGTGTATGTCTTGTGACAAAACAGTTTATCTAGTTGATAAGTTGACTGCAGATAACCGAATTTACCACAAAGGTTGCTTCAGATGCCACCATTGCAAAGGAACCCTCAAGCTTAGCAACTATAATTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGACCAACTCTTCAAAAGAACCGGCAGTCTTGACAAAAGCTTTGAAGGAACACCAAAAATTGCTAAACCAGAAAAAAGTAGTTATAATGAGAAACCTGCAGCAGCCAAAGTGTCAAGCATGTTTGGTGGAACCAGAGAGAAATGTTCTGGTTGTCAGAAAACAGTATATCCCACTGAAAAGGTTAGTGTGAATGGAACACCTTATCACAAGAGTTGTTTCAAATGCATTCATGGAGGGTGTGTTATAAGTCCTTCCAATTACATAGCACACGAAGGAAAACTGTATTGCAAACATCACCATGTTCAACTGATTAAGGAGAAGGGGAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAATGCTAACAGTGAAGTTGCTGCAGCTGACTAA	576	0.4045	MAFAGTTQKCMSCDKTVYLVDKLTADNRIYHKGCFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKSSYNEKPAAAKVSSMFGGTREKCSGCQKTVYPTEKVSVNGTPYHKSCFKCIHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHEKNANSEVAAAD	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02799	191	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Car05g02799	191	ProSiteProfiles	LIM domain profile.	108	168	IPR001781	-
	Car05g02799	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Car05g02799	191	MobiDBLite	consensus disorder prediction	172	191	-	-
	Car05g02799	191	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Car05g02799	191	Pfam	LIM domain	110	164	IPR001781	-
	Car05g02799	191	Pfam	LIM domain	10	64	IPR001781	-
	Car05g02799	191	PANTHER	LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE	1	184	-	-
	Car05g02799	191	Gene3D	Cysteine Rich Protein	4	74	-	-
	Car05g02799	191	Gene3D	Cysteine Rich Protein	105	174	-	-
	Car05g02799	191	PANTHER	OS06G0237300 PROTEIN	1	184	IPR045268	GO:0051015
	Car05g02799	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Car05g02799	191	SMART	lim_4	109	161	IPR001781	-
	Car05g02799	191	SMART	lim_4	9	61	IPR001781	-
	Car05g02799	191	CDD	LIM2_SF3	110	170	-	-
	Car05g02799	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	102	135	-	-
	Car05g02799	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	136	175	-	-
	Car05g02799	191	CDD	LIM1_SF3	6	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02799	Car-Chr5	73034069	73036174	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Car05g02799		LIM	9.6e-13	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02799	05	73034069	73036174	Car05g02799	05	73034069	73036174	ECH
	Car04g03379	04	62332279	62334373	Car05g02799	05	73034069	73036174	PCT