Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02787 ATGGCTTTGGAATCCCTCAAATCACCCACCACCGTCACTCATTCATTCACTTCCTTTGAAATTGAAGAACCTAATCACAGTTACATCGATACACCGTGGACCAAACGTAAACGTTCAAAGCGTTCTCGTATGGATAGCCACAATCACCAATCTTCATGCACTGAAGAAGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGTGGCAAAGAAACTATCTCCACCGCCAAATCACCTATTCTATCGCCGCCGGTAACCACCACCGCTAAGCTCAGTCATAAATGCTCTGTTTGCAACAAAGCTTTTTCATCTTACCAAGCACTTGGCGGACACAAAGCTAGCCACAGGAAACTCGCCGTTATTACCACCGCTGAAGATCAATCCACCACCTCATCAGCCGTGACGACAAGCTCCGCATCCAACGGTGGAGGTAAGATCAAGACTCATGAATGCTCCATCTGTCATAAATCCTTCCCTACAGGACAGGCTTTGGGAGGTCACAAGCGTTGCCACTACGAAGGCGGTGCCGGTGGTGGAAACAGCGCCGTAACTGCTTCTGAAGGAGTTGGATCGTCTCATAGCCACCACCGTGACTTCGATCTTAACCTCCCGGCTTTTCCGGACTTTTCAAAGAAGTTTTTCGTGGATGATGAGGTTTCCAGCCCTCTACCTGCAGCGAAGAAGCCGTGTCTTTTCAATATGGCAGAGATTGAAATCCCTCAATACTGA 735 0.4884 MALESLKSPTTVTHSFTSFEIEEPNHSYIDTPWTKRKRSKRSRMDSHNHQSSCTEEEEYLALCLIMLARGGKETISTAKSPILSPPVTTTAKLSHKCSVCNKAFSSYQALGGHKASHRKLAVITTAEDQSTTSSAVTTSSASNGGGKIKTHECSICHKSFPTGQALGGHKRCHYEGGAGGGNSAVTASEGVGSSHSHHRDFDLNLPAFPDFSKKFFVDDEVSSPLPAAKKPCLFNMAEIEIPQY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02787 244 Pfam C2H2-type zinc finger 151 174 - -
Car05g02787 244 Pfam C2H2-type zinc finger 95 119 - -
Car05g02787 244 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 233 IPR044653 GO:0003700
Car05g02787 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Car05g02787 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Car05g02787 244 PANTHER ZINC FINGER PROTEIN ZAT10 1 233 - -
Car05g02787 244 SUPERFAMILY beta-beta-alpha zinc fingers 95 173 IPR036236 -
Car05g02787 244 SMART c2h2final6 151 173 IPR013087 -
Car05g02787 244 SMART c2h2final6 95 117 IPR013087 -
Car05g02787 244 MobiDBLite consensus disorder prediction 126 147 - -
Car05g02787 244 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Car05g02787 244 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Car05g02787 244 MobiDBLite consensus disorder prediction 32 51 - -
Car05g02787 244 Gene3D Classic Zinc Finger 92 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02787 Car-Chr5 72935950 72937073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02787 1 231 C2H2 Transcription Factor Family AT1G27730 51.899 8.91e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g02787 zf-C2H2_6 1.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02787 05 72935950 72937073 Car04g01423 04 14488323 14489714 ECH
Car05g02787 05 72935950 72937073 Car05g02787 05 72935950 72937073 ECH
Car04g03391 04 62470336 62472048 Car05g02787 05 72935950 72937073 PCT