Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02732 ATGCAATCATCCAACGGCTCTGATTTGCAACCAACGGACCAACAGAATCAACAACGCCAACAGAAAACAACGCCGCCGCCGCCGCCACACCAGTGGGTGCCGATGCAATACCCTGCGGCAGCAATGGTAATGCAGCATCACATGTTACCGCCTCAACATTATGCGCCGCCGTCACCTCATCACTACATTCCTTACCATCACTACCAGCACCAAATTACGCACGTGCATCAACGATCCAGCGCCGATAATAAGACCATCTGGGTCGGTGATTTGCACCATTGGATGGATGAAAATTATCTCCACTGTTGTTTCGCTTCCACCGCTGAGATTTTTTCCATTAAGGTTATTCGCAATAAGCATACTGGTCAATCAGAGGGTTATGGATTCGTGGAGTTCCATTCACATGGCACAGCTGAGAAAGTTTTGCAGAATTTTGCTGGGGTTTTGATGCCTAACACAGATCAACCTTTTCGCCTTAACTGGGCAACATTTAGCACAGGAGACAAACGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTACTGATGTTACAGATAGCATGTTGCATGAAACTTTCTCTAATAAATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGAATGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGAATCGGGGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCCGAAGCTGATTCTACAAATACAACTATATTTGTTGGAGGACTTGACCCTAATGCTACTGCTGAAGATCTCAGAGAACCATTCTCCGAGTATGGTGAGATAGTCTCAGTTAAGATACCTGTCGGAAAAGGATGTGGCTTTGTACAATTTGCCAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGTGCAACAATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGGATGGATTTCGGCAGTCCCTGGAATGGGGCGTATTATGGAGGGCCTGTTTATGACGGTTATGGATATGCTGCATTGCCGCATCCCCATGACCCTAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAGCAAGTAAGCTGA 1242 0.4565 MQSSNGSDLQPTDQQNQQRQQKTTPPPPPHQWVPMQYPAAAMVMQHHMLPPQHYAPPSPHHYIPYHHYQHQITHVHQRSSADNKTIWVGDLHHWMDENYLHCCFASTAEIFSIKVIRNKHTGQSEGYGFVEFHSHGTAEKVLQNFAGVLMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLATDVTDSMLHETFSNKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTSSQSEADSTNTTIFVGGLDPNATAEDLREPFSEYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGATIGKQTVRLSWGRNPANKQFRMDFGSPWNGAYYGGPVYDGYGYAALPHPHDPSMYAAAYGAYPIYGGHQQQVS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02732 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 354 IPR000504 GO:0003723
Car05g02732 413 Gene3D - 83 163 IPR012677 -
Car05g02732 413 CDD RRM3_NGR1_NAM8_like 281 352 - -
Car05g02732 413 SMART rrm1_1 283 350 IPR000504 GO:0003723
Car05g02732 413 SMART rrm1_1 178 252 IPR000504 GO:0003723
Car05g02732 413 SMART rrm1_1 85 160 IPR000504 GO:0003723
Car05g02732 413 MobiDBLite consensus disorder prediction 257 285 - -
Car05g02732 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 412 - -
Car05g02732 413 CDD RRM2_SECp43_like 176 255 - -
Car05g02732 413 CDD RRM1_SECp43_like 85 165 - -
Car05g02732 413 MobiDBLite consensus disorder prediction 253 285 - -
Car05g02732 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 347 IPR000504 GO:0003723
Car05g02732 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Car05g02732 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 248 IPR000504 GO:0003723
Car05g02732 413 SUPERFAMILY RNA-binding domain, RBD 43 165 IPR035979 GO:0003676
Car05g02732 413 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 412 - -
Car05g02732 413 SUPERFAMILY RNA-binding domain, RBD 176 354 IPR035979 GO:0003676
Car05g02732 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Car05g02732 413 MobiDBLite consensus disorder prediction 1 21 - -
Car05g02732 413 Gene3D - 272 384 IPR012677 -
Car05g02732 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 164 IPR000504 GO:0003723
Car05g02732 413 MobiDBLite consensus disorder prediction 1 34 - -
Car05g02732 413 Gene3D - 165 271 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02732 Car-Chr5 72410048 72414426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02732 61 362 Eukaryotic Initiation Factors Gene Family AT4G34110 27.564 8.80e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02732 05 72410048 72414426 Car05g02732 05 72410048 72414426 ECH
Car04g03460 04 63258244 63262985 Car05g02732 05 72410048 72414426 PCT