Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02253 ATGTTCCCACAAAGACATAACAATATTAGTTCTATCGAGCTAGAGCAAATGTTGCATTTGCTAtcttcttcttcttcttctCCAATTCCACTTTCAACCTCAATGGACAAATCAAATTCAAGGTGGAAACCAAACATTGAAATAGCTCCCAATTGTCCTCGTTGCGCTTCAACCAACACCAAATTCTGTTACTACAACAATTACAGCCTGTCACAGCCACGGTATTTTTGCAAAGGTTGTAGGCGTTATTGGACAAAAGGTGGCTCTCTTCGGAATGTTCCCGTTGGCGGTGGTTGCCGCAAAACCCGTCGCGGAAAGACGATCAGGAATTCTCATACCGATCGTCTTTCTGCAAATGGCTCTGAGGATGATGCAGATGGTCATCATCATCAGAGCCAAAATAACGGGTCGCGCGATATAGACATGGCTCTCGTGTTCGCGAAATTCTTAAACCAAAATCCAACAAACAGTGATCATGGCGAGGAATTTGAGAATGAAAATGAGCCTATAAATAACGGGTCACCGTCTTCGAACAATATTAACAATTTGTCAACACCGGAAAGCGTTGAAACAGAGAATGATGCAGTGGTTCATCCTCAAAATCCTTTTGATGCTGATTCAGTGGCTTTAAATGGGGAATTGAGTTTGAGTGGAATTGATGAGTTTGAAGGGTTTCTAGGTGTTGATGAAGATGTGGTTCAAGATGTTCTATGGTctcattctgatgctaatgctaatgttaatgctatgatgatgGTTTCATCTTCAAATTATACATGGCAACAACCATCATCCATGATGCAAATGGATGAGTTAGAGTACTCAATGCCATTGCCAATATTGAATGAGAATGGTACTCATGATGATCAATTATTATCTCATACTTTTAATTCAAATTCTACAACTGTTAATTTAATTAATGACAGTTGGAATTCTTGGGGTTCCTTTGATCTTTCAACTATGGAAGTCTTCTCATCAAGTTCAAGACCTTAA 993 0.3746 MFPQRHNNISSIELEQMLHLLSSSSSSPIPLSTSMDKSNSRWKPNIEIAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRGKTIRNSHTDRLSANGSEDDADGHHHQSQNNGSRDIDMALVFAKFLNQNPTNSDHGEEFENENEPINNGSPSSNNINNLSTPESVETENDAVVHPQNPFDADSVALNGELSLSGIDEFEGFLGVDEDVVQDVLWSHSDANANVNAMMMVSSSNYTWQQPSSMMQMDELEYSMPLPILNENGTHDDQLLSHTFNSNSTTVNLINDSWNSWGSFDLSTMEVFSSSSRP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02253 330 MobiDBLite consensus disorder prediction 101 137 - -
Car05g02253 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 30 262 - -
Car05g02253 330 MobiDBLite consensus disorder prediction 167 190 - -
Car05g02253 330 Pfam Dof domain, zinc finger 50 103 IPR003851 GO:0003677|GO:0006355
Car05g02253 330 MobiDBLite consensus disorder prediction 154 190 - -
Car05g02253 330 MobiDBLite consensus disorder prediction 116 135 - -
Car05g02253 330 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Car05g02253 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 262 IPR045174 GO:0003700|GO:0006355
Car05g02253 330 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02253 Car-Chr5 67696187 67697563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02253 42 157 C2C2-Dof Transcription Factor Family AT3G52440 60.331 2.07e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car05g02253 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02253 - - mtr:MTR_3g090430 429.483