Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01533 ATGCATAAAACCACACTCTCCATCTTCTTACTCTTCCAAGCTTTACTAACCGTAACCTCAAAATCAACCATAGAACCATGCACAAACTCCGACACATGCAACGCATTACTAGGTTACACTCTCTACACCGACCTCAAAGTCTCCGAAGTATCTTCCCTCTTCCAAATCGACCCAATCTCTCTCCTAACCGCCAATGCCATCGACATCTCTTACCCCGACGTTGAACACCACATCCTTCCTTCAAAACTCTACCTCAAAATCCCAATCTCTTGCTCCTGCGTCGATGGAATTCGCAAATCCGTTTCCACAAACTACAAAATACGTCCTTCCGATACTCTTTCCACCATTGCTGACTCTGTCTACGGTGGTTTGGTTTCTTCTGACCAACTAAAAGAAGCTAATTCTATAAACGATCCTTCTGTTCTTGATGTTGGACAGAACCTTGTTGTTCCTCTTCCTTGTACTTGCTTCAATGGTTCTGATAACTCTTTGCCTGCAATTTATCTCTCTTATGTTGTTCAACCACTTGATAGTTTGGCTGCTATTGCCGCTAGGTATTTCACTACTCTCACTGATTTGATGAATGATAATGCTATGGGAACTACTGCTATTTCTGATGGTGATATCCTTGCTATTCCTATTCCGGCTTGTGCTTCGAATTTTCCTAAATATGCCTCTGATTTTGGCTTGCTTGTACCTAATGGAAGTTATGCAATTACAGCAGGACATTGTGTGCAATGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCAAGCATGCAATGTAAAAACAGCAATCTTATGCTTGGGAATGTTACCGTGCAACAGACTGGTGGTGGTTGCAATGTGACTTCTTGTAGTTATGATGGTATTGTTAATGGCACCATAGCGACAACGTTGAACCCGTCTCTTCAGCCTCGATGTCCAGGGCAACAGGAATTCCCTCCTCTTATCGCCCCACCTACATCGGTTGAGAAGGAATCAGAATTTGCACCAGCACCATCGCCATCGTCGCAGTCAGATGGAACTGGTGGGAGATCACCCACATCCTCCGTGGTGCCTTCAACAGGGATTTCAGGATTTACTCCTGCAAATGGCCCTATTAGTGGGATTTCTTCTGGCGCGTCTGCTGCATCCTCCTTGGTGAAGCCATTACCAACATTGACGCCTGCACTTGTGTTATTACTCGTCAAGTTGATGATCCCTGTGGCATTGTAA 1248 0.4463 MHKTTLSIFLLFQALLTVTSKSTIEPCTNSDTCNALLGYTLYTDLKVSEVSSLFQIDPISLLTANAIDISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKIRPSDTLSTIADSVYGGLVSSDQLKEANSINDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPLDSLAAIAARYFTTLTDLMNDNAMGTTAISDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQTGGGCNVTSCSYDGIVNGTIATTLNPSLQPRCPGQQEFPPLIAPPTSVEKESEFAPAPSPSSQSDGTGGRSPTSSVVPSTGISGFTPANGPISGISSGASAASSLVKPLPTLTPALVLLLVKLMIPVAL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01533 415 CDD LysM 170 212 IPR018392 -
Car05g01533 415 SMART LysM_2 104 151 IPR018392 -
Car05g01533 415 SMART LysM_2 170 213 IPR018392 -
Car05g01533 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 10 388 - -
Car05g01533 415 SUPERFAMILY LysM domain 104 152 IPR036779 -
Car05g01533 415 MobiDBLite consensus disorder prediction 342 368 - -
Car05g01533 415 ProSiteProfiles LysM domain profile. 169 212 IPR018392 -
Car05g01533 415 CDD LysM 105 150 IPR018392 -
Car05g01533 415 Gene3D LysM domain 160 221 IPR036779 -
Car05g01533 415 SUPERFAMILY LysM domain 169 214 IPR036779 -
Car05g01533 415 MobiDBLite consensus disorder prediction 321 368 - -
Car05g01533 415 Pfam LysM domain 171 213 IPR018392 -
Car05g01533 415 Pfam LysM domain 105 151 IPR018392 -
Car05g01533 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 388 - -
Car05g01533 415 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Car05g01533 415 Gene3D LysM domain 99 159 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01533 Car-Chr5 59757550 59760547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01533 8 390 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.974 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01533 - - gmx:100808966 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01533 05 59757550 59760547 Car05g01533 05 59757550 59760547 ECH