Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01172 ATGCATAAAACCACACTCTCCCTCTTCTTACTCTTCCAAGCTTTACTAACCGTAACCTCTAAATCAACCATAGAACCATGCACTAACTCCGACACATGCAACGCATTACTAGGTTACACTCTCTACACCGACCTTAAAGTCTCCGAAGTATCTTCCCTCTTCCAAATCGACCCAATCTCTCTCCTAACCGCCAATGCCATCCACATCTCTTACCCCGACGTTGAACACCACATTCTCCCTTCAAAACTCTACCTCAAAATCCCAATCTCTTGCTCCTGCGTCGACGGAATTCGTAAATCCGTTTCCACAAACTACAAAATACGTCCTTCCGACACTCTTTCCACCATTGCTGACTCTGTCTACGGTGGTTTGGTTTCTTCTGACCAACTAAAAGAAGCTAATTCTATAAACGATCCTTCTGTTCTTGATGTTGGACAGAACCTTGTTGTTCCTCTTCCTTGTACTTGCTTCAATGGTTCTGATAACTCTTTGCCTGCAATTTATCTCTCTTATGTTGTTCAACCACTTGATAGTTTGGCTTCTATTGCCGCTAGGTATTTCACTACTCTCACTGATTTGATGAATGTTAATGCTATGGGAACTACTGCTATTTCTGATGGTGATATCATTGCTATTCCTATTCCGGCTTGTGCTTCGAATTTTCCTAAATATGCCTCTGATTTTGGCTTGCTTCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCATGCTCAAGCATGCATTGTTGAACCCATCTCTTCAGCCTCGATGTCCAGGGCAACAGGAATTCCCTCCTCTTATCGCCCCACCTACATCTGTTGAGAAGGAATCAGAATTTGCACCGGCACCATCACCATCACCGGCACCATCGCCCCTCCTAACTATTGTAGTTGCTCATATTCATTTGTACTCTTGA 936 0.437 MHKTTLSLFLLFQALLTVTSKSTIEPCTNSDTCNALLGYTLYTDLKVSEVSSLFQIDPISLLTANAIHISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKIRPSDTLSTIADSVYGGLVSSDQLKEANSINDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPLDSLASIAARYFTTLTDLMNVNAMGTTAISDGDIIAIPIPACASNFPKYASDFGLLLWTPKLKFVLYAGFSSCFMLKHALLNPSLQPRCPGQQEFPPLIAPPTSVEKESEFAPAPSPSPAPSPLLTIVVAHIHLYS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01172 311 Gene3D LysM domain 99 159 IPR036779 -
Car05g01172 311 Gene3D LysM domain 160 221 IPR036779 -
Car05g01172 311 CDD LysM 105 150 IPR018392 -
Car05g01172 311 SUPERFAMILY LysM domain 104 152 IPR036779 -
Car05g01172 311 Pfam LysM domain 105 151 IPR018392 -
Car05g01172 311 Pfam LysM domain 171 213 IPR018392 -
Car05g01172 311 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 236 289 - -
Car05g01172 311 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 232 - -
Car05g01172 311 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 236 289 - -
Car05g01172 311 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 10 232 - -
Car05g01172 311 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Car05g01172 311 ProSiteProfiles LysM domain profile. 169 212 IPR018392 -
Car05g01172 311 SMART LysM_2 104 151 IPR018392 -
Car05g01172 311 SMART LysM_2 170 213 IPR018392 -
Car05g01172 311 SUPERFAMILY LysM domain 169 214 IPR036779 -
Car05g01172 311 CDD LysM 170 197 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01172 Car-Chr5 54530751 54532961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01172 242 292 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 50.980 5.39e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01172 - - gmx:100808966 394.43