Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00681 ATGATTGAAAGTAAGGACCCTGCAATTAAGCTCTTCGGCCAGAATATTCCCTTTTCTGGGGAAGCTGAAGCTCTTACCATCACCGGCAATCAAACTGCATCGCCGACGATAATGGATGTAGAACAAGAAGAAAGAGATTTTGATGAATCAACGAATGAAGATGAAGAGAAAGACAAGgaacatgaagcagaaaaagataccgagaaaaagaaagagaCTGATCCTCCTCCAAACAACGCAGAGACCAAGAACAACAATTCCGCAACAACATTGGCTAAAGATATTCACAATACAAAGAGACTGTCAATAGATGAAGAAACTTCCATATCAGAGAATGATCAAACTGATGCAGCAACAACTAACCACAACAGTCAAGAGAAAATACTTAAAAAGCCCGACAAAATACTCTCGTGTCCACGCTGCAACAGCATAGACACAAAATTCTGTTACTACAACAACTACAATGTCAATCAGCCACGCTATTTCTGCAAGGCGTGTCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTTCCAGTCGGAGCAGGGAGAAGAAAGAACAAGAACAACTCTTCCTCTCATTATCGACACATCACGATTTCTGAGGCACTTCAAGCAGCTAGAGTTGTTGCTCCGAATGGAACTCATCATCTTTCAAATTTAAAAACCAATGGTAGAATCCTCAGCTTTGGATTGGATCATCCACAAATTTGTGATTCATTGGAAAATGTCTTCAACCCTGCAGAGAAAAAAGGTCTTAACAGCACTCGAAATAGCGAGTTTCATAGCATTGAAGGAACAAAGATTCCGGTTAGTAGGAGTCAAAATGATGGTCACAACTCAAGTGCATCTTCTAAAACAGTTGCAAATTCTATCGAGGAAAGTGGCAAAACCATGTCCCAAGAATCATTACCACAAAAAAATAATGGTTTCATTCCTCAAGTTCCATGCATTACTAGTGTTCCTTGGCCTTATCCTTGGAGTTCGACGATTCCCTCTCCACCTGCTTTGTGTCCTCCAGGATTTCCCATGTCATTCTACCCTGCTGCTTTTTGGAATGTTCCTTGGTTTCCCTCTCATCCATCGGTTACAAATCCAATGTCTCTGAACTCTAGTCTGAATTCTCCAACACTCGGGAAACACTTGAGGAATGATGATAACGACGACAACTTAGCTAAACAAGACCATTTACAAAATGAAGAATCACCAAAACAAAGAAATGGGTCTGTTTTGGTTCCAAAAACGTTGAGAATCGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACACTTGGAATTACAAATGAATGTGTGAGTGGGGGAGGTATGACTAAGGCATTTCAATCAAAGAAAGATGGAAAAAAACATGTTGCTGAAACCTCTCCAATGTTAAGGGCTAACCCTGCAGCTTTGGCTAGATCCCTTAATTTTCATGAGAGCTCTTAA 1455 0.3986 MIESKDPAIKLFGQNIPFSGEAEALTITGNQTASPTIMDVEQEERDFDESTNEDEEKDKEHEAEKDTEKKKETDPPPNNAETKNNNSATTLAKDIHNTKRLSIDEETSISENDQTDAATTNHNSQEKILKKPDKILSCPRCNSIDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNSSSHYRHITISEALQAARVVAPNGTHHLSNLKTNGRILSFGLDHPQICDSLENVFNPAEKKGLNSTRNSEFHSIEGTKIPVSRSQNDGHNSSASSKTVANSIEESGKTMSQESLPQKNNGFIPQVPCITSVPWPYPWSSTIPSPPALCPPGFPMSFYPAAFWNVPWFPSHPSVTNPMSLNSSLNSPTLGKHLRNDDNDDNLAKQDHLQNEESPKQRNGSVLVPKTLRIDDPSEAAKSSIWATLGITNECVSGGGMTKAFQSKKDGKKHVAETSPMLRANPAALARSLNFHESS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00681 484 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Car05g00681 484 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Car05g00681 484 MobiDBLite consensus disorder prediction 267 309 - -
Car05g00681 484 MobiDBLite consensus disorder prediction 26 128 - -
Car05g00681 484 MobiDBLite consensus disorder prediction 397 416 - -
Car05g00681 484 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Car05g00681 484 MobiDBLite consensus disorder prediction 78 96 - -
Car05g00681 484 PANTHER CYCLIC DOF FACTOR 2 1 483 IPR045174 GO:0003700|GO:0006355
Car05g00681 484 MobiDBLite consensus disorder prediction 52 77 - -
Car05g00681 484 PANTHER CYCLIC DOF FACTOR 1 1 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00681 Car-Chr5 38295369 38298449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00681 1 482 C2C2-Dof Transcription Factor Family AT3G47500 45.070 2.40e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car05g00681 zf-Dof 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00681 - - gsj:114409713 563.918