Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00515 ATGTGTGGTGGTCCTGAGAAATCTAAATCTCTTTCAACTTCATCGTCTTCATCTCCATCTGCTGTAGAAGGTTCAAATAACGTCAAAGACATGAAAAATCTAACGGTTCATACTGATGATTCTTTTTCCAGCTTACTTGAACTTGCTTCTAACAACGATTTTGAGGAATTTAAGGTAGCTTTAGATAGTAGCGCTTCTCTGATAAATGAGGTTGGCTTCTGGTATGTCCGACAAAATGGATCCAAACAAATTGTTCTTGAGCACAGAACCCCTTTAATGGTGGCTGCTTCCTATGGGAGTATTGATATTCTAAAGCTTATACTCTCATGTCCAGAGGCTGATGTAAATTTCTCCTGTGGCACCGATAAAAGCACTGCTCTTCACTGTGCTGCTTCAGGTGGTTCTGTTAATGCAATTGATGCGGTAAAGCTGCTTTTATCAGCTGGTGCTGAAATCAATTGTGTGGATGCTAATGGGAACCGTCCAGTTGATGTTATTGTTTTTCCTCCTAAGCTTGAAGGTGTGAAAATAATTCTTGGAGAACTCCTCTCAGATAGTACTTCTGATGGGTCTGTTGATGATTGTTCTCTTCCAGTATCTATTGATTCATCAAGTCCTGGTTCAGCTGCCCCTTCGTCATCAATTGAAAATGGATATCCAACGTCTCCGGTGGCTCTGAAGTTTACCGACCCAGCTGTTAATTCTACACCAGAAAAGAGAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAATAGCATATATGCCACAGATGAGTTTCGCATGTTTTCGTTCAAGGTTCGTCCTTGTTCTCGTGCATATTCTCATGATTGGACTGAGTGTCCGTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCTAGAAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTGGGGATATGTGTGAATATGCTCACGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGACGGTACAAGCTGTAACCGAAGGGTGTGCTTTTTTGCTCACATAGCTGAAGAGCTGCGTCCATTGTATGTCTCCACTGGATCTGCTGTCCCTTCACCAAGATCATCTGCCTCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTCCCTGGTTCCCCATCATCAATGTCTTCCATGTCTCCATCTCCATTTGCACAGCCCATATCTCCATCTGCAAATGGCATCTCTCACTCAAATAACGCGTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGTAATATTCAAACTAGTCGTTTGAGATCTTCTCTTAGTGCCCGTGATATGCCACTTGAAGACTTCCACAATATGCTACAAGACTTTGACGGTCAGCAGCACATATTAAATGACATGGGCTGTTTCTCACAGCCCCGTCCAGGTGCTATTTCAGTGAGTCGACCTGGTCGGTCTAAAATACTAACTCCGTCAAATCTTGACGATCTATTTTGTGCTGAAATTTCTTCGTCTCCTCGGTATTCTGATCCAGCACCAGCCTCTGTATTTTCCCCAACACACAAATCAGCTGTTTTCAACCAGTTTCAACAGCTCCAAAGTTCGTTGTCACCCATAAATACAAATGTCATGTCTCCTAAGAATGCTGAGCATCCTCTATTCCACCAGGCTTCATACGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAACCCCTCTCTCCAATGAGTGCTCGAATGTCAGCATTTGCTCATCGTGAGATACAGCAGCAACAGCTGCGGAGCCTTAGTTCAAGAGAACTTGGTGCTAACAATTCTGTCTCAGTTGTTGGGTCCCCTGTGAACTCCTGGTCTAAATGGGGATCCCCTAATGGAAAAGCAGATTGGTCTGTAAATGGAAATGAGTTTGGTCGATCACAAAGATCCACCTCTTTTGAGCATGGAAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAATCCCTTGTCAAGGAATCCCCACCTGAGATAAAAGAGAAGCTAGCAGGTTCTGGCCCTATTGCATCAGCTGAGATGAATTCAAATCCTCAAGTAGATTCTATTGATCATTCGGTTTTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG 2181 0.4411 MCGGPEKSKSLSTSSSSSPSAVEGSNNVKDMKNLTVHTDDSFSSLLELASNNDFEEFKVALDSSASLINEVGFWYVRQNGSKQIVLEHRTPLMVAASYGSIDILKLILSCPEADVNFSCGTDKSTALHCAASGGSVNAIDAVKLLLSAGAEINCVDANGNRPVDVIVFPPKLEGVKIILGELLSDSTSDGSVDDCSLPVSIDSSSPGSAAPSSSIENGYPTSPVALKFTDPAVNSTPEKREYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLFPGSPSSMSSMSPSPFAQPISPSANGISHSNNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPLEDFHNMLQDFDGQQHILNDMGCFSQPRPGAISVSRPGRSKILTPSNLDDLFCAEISSSPRYSDPAPASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNAEHPLFHQASYGVSSPGRMSPRSMEPLSPMSARMSAFAHREIQQQQLRSLSSRELGANNSVSVVGSPVNSWSKWGSPNGKADWSVNGNEFGRSQRSTSFEHGNNGEEPDLSWVQSLVKESPPEIKEKLAGSGPIASAEMNSNPQVDSIDHSVLGAWLEQMQLDQLVV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00515 726 MobiDBLite consensus disorder prediction 7 30 - -
Car05g00515 726 MobiDBLite consensus disorder prediction 1 30 - -
Car05g00515 726 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Car05g00515 726 PANTHER UNKEMPT FAMILY MEMBER 25 724 IPR045234 -
Car05g00515 726 SUPERFAMILY Ankyrin repeat 34 180 IPR036770 -
Car05g00515 726 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 25 724 - -
Car05g00515 726 SMART ANK_2a 122 154 IPR002110 GO:0005515
Car05g00515 726 SMART ANK_2a 87 117 IPR002110 GO:0005515
Car05g00515 726 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 325 IPR000571 GO:0046872
Car05g00515 726 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Car05g00515 726 Gene3D - 300 363 - -
Car05g00515 726 SMART c3hfinal6 335 358 IPR000571 GO:0046872
Car05g00515 726 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Car05g00515 726 Pfam Ankyrin repeats (3 copies) 79 156 IPR002110 GO:0005515
Car05g00515 726 Gene3D - 6 168 IPR036770 -
Car05g00515 726 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00515 Car-Chr5 24851035 24856129 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g00515 Ank_2 1.8e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02586 07 49330480 49334218 Car05g00515 05 24851035 24856129 PCT