Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00223 ATGATCAGAAAAATGCTTCATCTATGGTTATTTAGCATCAAATTCATATACCTTTTCTATTTTGCTAGAAGCCAAAACAATAGCAATTCACAAGCACTACTTGATTATAGATATGCTTGTTTAGACCAATCTTCTGTTGCTCCTTCTACAACATACCAAAGCAACCTCAACAATTTAATCTCTTCATTATCATCAGATTCAGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAAACAATATGGTTTATGGACTCTATCTTTGTCGCGGCGATGTTAACACAAGCCTTTGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAAACAGCACTGTCCAAACAATAACACAGCAATTTTGTGGTACCCCTTTTGTCTTTTCAGATACTCTAATCAAAATTTCTTTGGTAATCTTACTATAAGACCGAGGATTCCTATGTTTGATGCAAAACAGAATTTTACTAGTGTTGGTGAATTTGATAGTGATGCTAAGGTTTTGATGAATGGTTTGATACAAATGGGATCACAGACAGATTTAATGTTTGGAACACATATGTTTAACATAAACGGTACTCAAAGAAGGTATGGTTGGGTTCAATGTAGTAGAGATATTACTAGTGAGGAATGTAGAACTTGTTTGAGTAATATGCTTGATGATGTTCAAAATTGTTGTATGGAGAAGAAAGTTTGGCGAATATTTTCTCCGAGTTGTATTGTTATGTATGAAACTCAACCATTCTTTTTGAATGATTCGCAGTCTAATGCGCCTGCGCCTCAACAAGCCAAAGAAAAAGATGGCACAAGCTCATCAACTATAATAATCATTGCTGTAATTGGAACAATAGTAGCAGCTCTATTGGCTTTCAGTACATACTATTTCTGGTGCTTAAAACATAGAAAAGAGAAAAATGCCATGCAAGTCCTTAGTCCAATTTTTTATCAAGATCAGCCTGACATTGAGGACACAGGAAATGCTGACTTACCTATGATGCCTCTGAGTAGCATTCTAAAATGTACTAGTAATTTTTCTGATGCATATAAATTAGGGAAAGGTGGATTTGGCACTGTCTACAAGGGTGTTTTAGCAGATGGAAGGGAAATTGCTGTTAAAAGGCTTTCAAAAACTTCAGCTCAAGGTGTGGAAGAATTGAAAAATGAAATAATATTGATTGCCAAATTGCAGCATAGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAACAAAATGAAAAGCTTCTTATATATGAATATTTGCCTAATTCAAGCCTTGATTTCCACCTATTTGATATGGTGAAGGGTGCACAACTAGATTGGAAACAAAGATTAAACATTATTAATGGGATTGCTAAAGGACTTCTATATCTTCATGAGGACTCTAGGCTCAGAGTTATTCACAGAGACCTAAAGGCTAGCAATATCCTCTTAGATCATGAAATGAATTCAAAAATATCAGATTTTGGACTGGCAAGAACATTTGGAGGAGACCAAGATGAAGCAAATACAATTAGAGTTGTAGGAACTTATGGATACATGGCTTCAGAATATGCAATGGAAGGATTATTTTCAGTGAAATCAGATGTTTTCAGCTTTGGTGTTCTTCTGCTAGAGATCATCACTGGAAGAAAAAACAATAAATTCTATCTCTCAGAGCATGGCAAAAGCCTTCCTATATATGCATGGAACCTTTGGTGTGAAAGAAAAAGTTTGGAATTGATGGATCCATTGATAGAAAAGTCAATTGTACATAGTGAATATATAAAGTGTATACATATTGGACTATTGTGTGTCCAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTCCACATGCTTGCAAGTGACAAAGTGACTCTTCCCAACCCAACACGCCCTGCATTTTCTGTTGGAAGAGCTGTTGTTGATCAAGTTTCTTCATCAAACACTTCTATCTCTGTCAATGAAGTAACCTTGTCTGAAGTGAGGCCTAGATAA 1989 0.358 MIRKMLHLWLFSIKFIYLFYFARSQNNSNSQALLDYRYACLDQSSVAPSTTYQSNLNNLISSLSSDSATSNGFGNRTSGSDQNNMVYGLYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNNTAILWYPFCLFRYSNQNFFGNLTIRPRIPMFDAKQNFTSVGEFDSDAKVLMNGLIQMGSQTDLMFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMLDDVQNCCMEKKVWRIFSPSCIVMYETQPFFLNDSQSNAPAPQQAKEKDGTSSSTIIIIAVIGTIVAALLAFSTYYFWCLKHRKEKNAMQVLSPIFYQDQPDIEDTGNADLPMMPLSSILKCTSNFSDAYKLGKGGFGTVYKGVLADGREIAVKRLSKTSAQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMVKGAQLDWKQRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNSKISDFGLARTFGGDQDEANTIRVVGTYGYMASEYAMEGLFSVKSDVFSFGVLLLEIITGRKNNKFYLSEHGKSLPIYAWNLWCERKSLELMDPLIEKSIVHSEYIKCIHIGLLCVQEDAADRPTMSSVVHMLASDKVTLPNPTRPAFSVGRAVVDQVSSSNTSISVNEVTLSEVRPR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00223 662 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 30 659 - -
Car05g00223 662 Pfam Salt stress response/antifungal 155 247 IPR002902 -
Car05g00223 662 Pfam Salt stress response/antifungal 45 136 IPR002902 -
Car05g00223 662 Gene3D Phosphorylase Kinase; domain 1 317 421 - -
Car05g00223 662 ProSiteProfiles Protein kinase domain profile. 346 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00223 662 Pfam Protein tyrosine and serine/threonine kinase 351 617 IPR001245 GO:0004672|GO:0006468
Car05g00223 662 Gene3D - 34 138 IPR038408 -
Car05g00223 662 Gene3D - 149 250 IPR038408 -
Car05g00223 662 Gene3D Transferase(Phosphotransferase) domain 1 422 626 - -
Car05g00223 662 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Car05g00223 662 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Car05g00223 662 SUPERFAMILY Protein kinase-like (PK-like) 332 646 IPR011009 -
Car05g00223 662 CDD STKc_IRAK 352 617 - -
Car05g00223 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Car05g00223 662 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 659 - -
Car05g00223 662 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Car05g00223 662 Pfam Domain of unknown function (DUF3403) 619 662 IPR021820 GO:0004674
Car05g00223 662 SMART serkin_6 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00223 Car-Chr5 5368244 5372178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00223 38 662 Receptor kinase-like Gene Family AT4G05200 40.367 4.19e-169 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car05g00223 PK_Tyr_Ser-Thr 4.3e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00223 05 5368244 5372178 Car07g02477 07 46454913 46459185 PCT