Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00221 ATGTTCAATCTTTGGTTACTTACCATAAAATTGATATGCATTTTCTCCTTTGCATATTCATCACAACTTGATTATAGATATGCTTGTTTAGACCAATCTTCAACTCCTCCATCAACAGCACATCAAACCAACCTCAACAAATTACTTTCATTACTATCATCAGATTCAGCTACAAGCAATGGTTTTGGTACAAAAATTTCAGGTATTAATTATGATCAAAACAACATGATTTATGGACTATACTTTTGTCGCGGCGACGTAAATGCAAGTATTTGCCATTCATGTGTTGAAAATGCAAGCAAATTGATAAAACAACAATGTCCAAATAATGCAACAGCTATTCTTTGGTGTCCCTTTTGTCTTTTGAGATACTCAAACAATAATTTCTTTGGAAAATTAGCTGTTAGGCCAAGAATTCCTATGTTTGATGCAACACAAAATTTTACTAGTGTTGGTGAATTTGATAGTGATGCAAGGATTTTGATGAATGGTTTGATACAAGTGGGATCACAGGCACGTTTAATGTTTGGAACACATATGTTTAATATTAATGGTACTCAAAGAAGGTATGGTTGGGTGCAATGTAGTAGAGATATTACTAAGGAGCAATGTAGAACTTGTTTGAGTAATATGCTTGAAGATGTTGAGAATTGTTGCAAGGAGAAGCGAGTTTGGCGAATATTTTCGCCGAGTTGTGTTGTTATGTATGAAACTCAACCGTTCTTTTTGAAAGGTGTGAACGATGACGCGTTTGAGTCTCAAAAAGGTAATTttttgttttCCAAAGAAAATGATATAAGATCAATTATTTTAACAACCGTTGTTGGTACTGGAATAGTAGTAGTAACACTATTGGCTTTATGCACAAACTACTTCAGGCGCTTGAAACAGAAACAAGATAAAAAAAATAGGCAAAACCTTCATTCAATGTTTCCTCAAGATGAGAATAACAATGAGGAGAACGTGAATACTGACCTACCTATGATACCTCTGAGTACTATTCTAAAGAGTACTAATAATTTTTCTGATAATTATAAATTGGGGGAAGGTGGATTTGGAGCTGTCTACAAGGCTGTTTTAGCAGATGGAAGGGAAATTGCTGTTAAAAGGCTTTCGAAAAATTCGGTTCAAGGTGCGGAGGAATTCAAGAATGAAGTAACTTTGATTGCCAAATTGCAGCATAGAAACCTTGTGAGAATGTTGGCTTGCTGCATTGAGAAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATATCCAGTTTCGCGATACGGTAAAAACTGCACAGTTGGATTGGAAACGAAGATTCAACATTATTAACGGAATTGCTAAAGGACTTTTATATCTTCATGAGGACTCTAGACTCCTAGTTATTCATAGAGACTTGAAAGCTAGCAATATACTATTAGATCATGAAATGAATCCAAAAATATCAGACTTTGGACTGGCGAGATCATTTGGAGGAGGCCAAAGCCCGACAAATACAGTTAGAGTTGTTGGAACTTATGGATACATGGCCCCAGAATATGCTTTGGAAGGCTTTTTTTCAGTGAAATCAGATGTTTTCAGCTTTGGTATTATTTTGCTGGAGATCATCAGCGGAAAAAGGAACAATAAATTCCATCTTCAAGAGCATGGACAAAGCCTTCTAACATATGCATGGGACTTATGGAATGCAAACAAAGGTCTAGAATTGATGGATCCGTGGATACAAGATTCACATGTGCCTGATGAAGTTTTGAAGTGTATACAAATTGGCTTATTGTGTGTACAAGATAAAGCATCTGATAGACCTACAATGTCAAATGTTGTTCACATGCTTGGAAGTGACAGAGTTTCTCTTCCCACCCCTCTATGTTCTTCTTTTTGTGTTAGAAGGACTAAAAAAGAAGGAGGGATTTCATCAAATGCTTCTTCCTCTGTCACTTTCAATGAAGTAACCCTGTCTGAATTGATTCCTAGATGA 1980 0.3576 MFNLWLLTIKLICIFSFAYSSQLDYRYACLDQSSTPPSTAHQTNLNKLLSLLSSDSATSNGFGTKISGINYDQNNMIYGLYFCRGDVNASICHSCVENASKLIKQQCPNNATAILWCPFCLLRYSNNNFFGKLAVRPRIPMFDATQNFTSVGEFDSDARILMNGLIQVGSQARLMFGTHMFNINGTQRRYGWVQCSRDITKEQCRTCLSNMLEDVENCCKEKRVWRIFSPSCVVMYETQPFFLKGVNDDAFESQKGNFLFSKENDIRSIILTTVVGTGIVVVTLLALCTNYFRRLKQKQDKKNRQNLHSMFPQDENNNEENVNTDLPMIPLSTILKSTNNFSDNYKLGEGGFGAVYKAVLADGREIAVKRLSKNSVQGAEEFKNEVTLIAKLQHRNLVRMLACCIEKNEKLLIYEYLPNSSLDIQFRDTVKTAQLDWKRRFNIINGIAKGLLYLHEDSRLLVIHRDLKASNILLDHEMNPKISDFGLARSFGGGQSPTNTVRVVGTYGYMAPEYALEGFFSVKSDVFSFGIILLEIISGKRNNKFHLQEHGQSLLTYAWDLWNANKGLELMDPWIQDSHVPDEVLKCIQIGLLCVQDKASDRPTMSNVVHMLGSDRVSLPTPLCSSFCVRRTKKEGGISSNASSSVTFNEVTLSELIPR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00221 659 Pfam Salt stress response/antifungal 146 238 IPR002902 -
Car05g00221 659 Pfam Salt stress response/antifungal 34 126 IPR002902 -
Car05g00221 659 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
Car05g00221 659 CDD STKc_IRAK 347 612 - -
Car05g00221 659 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Car05g00221 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Car05g00221 659 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Car05g00221 659 SUPERFAMILY Protein kinase-like (PK-like) 323 612 IPR011009 -
Car05g00221 659 ProSiteProfiles Protein kinase domain profile. 341 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00221 659 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00221 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 656 - -
Car05g00221 659 Gene3D - 140 241 IPR038408 -
Car05g00221 659 Gene3D - 23 129 IPR038408 -
Car05g00221 659 PANTHER PROTEIN KINASE DOMAIN 27 656 - -
Car05g00221 659 Gene3D Transferase(Phosphotransferase) domain 1 418 619 - -
Car05g00221 659 SMART serkin_6 341 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00221 659 ProSiteProfiles Gnk2-homologous domain profile. 23 129 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00221 Car-Chr5 5347301 5353224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00221 6 659 Receptor kinase-like Gene Family AT4G05200 38.540 2.37e-162 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car05g00221 Pkinase 1.8e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00221 05 5347301 5353224 Car07g02472 07 46391691 46397968 PCT