Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00190 ATGAATCAAGTGAAAACTGAGAATGAGGATGATATGCAATGCAATGATCAAACGAGGTCACAGTTGAACGATGAGGGTAATGGAGGAAGTGTTGGTGGAGTTGTTGTTCTGAAGAAAGGGCCATGGACATCTGCGGAAGATGCTATTTTGGTTGACTACGTCAGGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGAATTCTGGACTGTCTCGATGTGGAAAAAGTTGTCGGCTGCGATGGGCAAATCACTTACGGCCAAATTTAAAGAAAGGGTCATTTACTGCTGATGAGGAGCAGTTGATTGCTAAACTCCATTCCAAAATGGGAAACAAATGGGCACGTATGGCAGCACACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTACTGGAATACTCGGACCAAGAGGTGTCAACGGGCTGGCTTGCCAGTTTATCCTAAAGAAGTGCGTAAGCGACCATTTCAAGAGGGTCAACGTGGCCAAGGCACTGGTGGAATCAATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATGCATGATGCAATATTTGACAATTTGAATTTGAAGCAAAATCAGGGAATCTTACCTATTGCAATTGTGCCAGAGAATCCTGATATTTCTGCTAACAGCATCCTGCTAAACAGTTTTGATTCTCCTCCATATTGTAATTCTGTGCCATCAGCACTACCTAACCATCACCATCTCCGAGAATCAACAATGCCTTTTCTCGGTTCAAGTGGAACAAACAAGAATTGGTTTTATCCTTATTACCATGTTCAGGATCATACTTCTGATAAGATTGTACAATCATTTGAATTGCATTCTCCACTTGATCCTAGTCCTTCCTCACATTACTCAATGTGTTACCTCCATTCCCTATCAAATGGCAATTCCTCCACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGTACCTTTCCCCAACCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGCTGCGCTAGAGTCCGGTTGTTCTTCACCACATAATAGTGGCACGCTCGAGGCCTTAGTTTATCAGTCGAAGACTTTTCCAAATTCAAAGAACAATAGTTCTGACAAGAGTTCACATTCATCTACTGCAACTCCGGTTGACAGAGCTGAGAGTTCTGTTTTGAACATGAATGAAACAGAATGGGAAGATTACACTGACCGGGCATCTCCCTTTGGTGCAACCTCAATCCTGAATGAGTGTCATGCTGTTAACACCAATGGGAACTCATGGGATAAATTGACACCTGCTCAGAACTTTAATGGCAACAATGTGAAATATGAGCCTGTTGACCAAGTTTCTACCCCTAACAGTGAAAATCAACCCATGTCTTTGTTGAACATCACTTGGCCAGATGTTTTGTTAGCTTCAGATTGGAATGACCAGTTTATGGACCTGAGAAGAACATGA 1515 0.431 MNQVKTENEDDMQCNDQTRSQLNDEGNGGSVGGVVVLKKGPWTSAEDAILVDYVRKHGEGNWNAVQKNSGLSRCGKSCRLRWANHLRPNLKKGSFTADEEQLIAKLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRTKRCQRAGLPVYPKEVRKRPFQEGQRGQGTGGINDGDRGHHDFLPKNNYEMHDAIFDNLNLKQNQGILPIAIVPENPDISANSILLNSFDSPPYCNSVPSALPNHHHLRESTMPFLGSSGTNKNWFYPYYHVQDHTSDKIVQSFELHSPLDPSPSSHYSMCYLHSLSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGTFPQPPLNESVDVFNQSPLPHAALESGCSSPHNSGTLEALVYQSKTFPNSKNNSSDKSSHSSTATPVDRAESSVLNMNETEWEDYTDRASPFGATSILNECHAVNTNGNSWDKLTPAQNFNGNNVKYEPVDQVSTPNSENQPMSLLNITWPDVLLASDWNDQFMDLRRT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00190 504 Gene3D - 94 140 - -
Car05g00190 504 MobiDBLite consensus disorder prediction 1 30 - -
Car05g00190 504 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Car05g00190 504 Gene3D - 38 91 - -
Car05g00190 504 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Car05g00190 504 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Car05g00190 504 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 497 - -
Car05g00190 504 SMART sant 38 88 IPR001005 -
Car05g00190 504 SMART sant 91 139 IPR001005 -
Car05g00190 504 MobiDBLite consensus disorder prediction 155 176 - -
Car05g00190 504 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 497 - -
Car05g00190 504 MobiDBLite consensus disorder prediction 381 409 - -
Car05g00190 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 90 IPR017930 -
Car05g00190 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 141 IPR017930 -
Car05g00190 504 CDD SANT 41 86 IPR001005 -
Car05g00190 504 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Car05g00190 504 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Car05g00190 504 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00190 Car-Chr5 4611974 4617238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00190 7 497 MYB Transcription Factor Family AT3G11440 42.412 2.32e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g00190 Myb_DNA-binding 3.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00190 05 4611974 4617238 Car07g02457 07 45855059 45860268 PCT