Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00185 ATGGAACAAGGGTTTGGTCAAAACTCAGTTCCTCCTCCAGGTTCCATTGACAAGTCAAAGATTTTGGATATTAAGCCTATAAGATATTTGATACCTGTTTTTTCTATGACTGGTCAAGATCCACCTTCAGCTCAATATCCTTCTGGATTTTCTCCATTTTTCCCATTTGGTGGACCTCAGGAGACTACTACAACTAGGGTGACAAGAAGAGGTCGAACCATGCCGGCTCCGATTCGATCGTTTAAAGCAGGAGACACTAGTTCAACAATGGAGGATCTCAATGACAATGATGATGTTTATGGTAGCAAAAGAAGTGGTTCGTCGCAACGGTTTAAGAAGAAGAGCAAGTTATATAAAGCATTGCCTATTGATTTGAGTGCTTTAGTTGGTCTAACTGCAGCCCAAAGAGATGATGGTAGCCGGGAAGTTGTTAATGTTGTACTCATGACATTTGATGCACTGAGAAGAAGGTTATGCCAACTCGTGGATGCTAAGGAATTGAACACGGGTTTGATCAAGCGTGCAGATTTAAAGGCTGGAAATATTTTGATGACCAAAGGAATTCGAACGAACGTGACGAAGAGAATAGGATCGGTACCTGGAGTTGAAATTGGGGACATTTTCTTTTTCCGAATGGAACTGTGTATTGTCGGTTTACACGCTCAATCCATGGGGGGGATAGATGCCTTGCATATCCATGGTGACCGTGACGAAGAAACTTTGGCTGTAAGCATTGTTTCGTCGGGAGAATATGATGACGACGATGAGGTCGGTGATGTTTTAATTTATACTGGTCAAGGTGGGAATTTCAACAAGAAAGATAAGCATGCGTCGGACCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGAAGTTCGCGAGTACACAATGAAGTAAGAGTCATCCGGGGCATCAAAGACATCGTGAATCCAAATGCAAAAATCTATGTCTATGATGGTCTGTATAAAATCCAAGATGCATGGGTAGAAAAAGCAAAAGGCAGCGGGGGCGGCTTGTTTAAGTATAAGTTGATAAGAATGCCTGGACAGCCTAGTGCCTTTGCAGTTTGGAAATCGATTCAGAAGTGGAAAACTGGATTACCTGCAAGGACTGGACTTATTCTCGCAGACCTTTCGTCAGGAGCCGAGAGTATTCCTGTGTCGCTTGTCAATGAAGTCGATAATGTGAAGGCACCTGCTTTTTTCACGTATTTCCACTCTCTTAGACATCCGAAATCGTTCAGTTTAATGCAGCCTTCACATGGTTGCAACTGTAGTACTAAAAATGCATGTGTCCCTGGTGATTTGAACTGCTCTTGCATCCGGAGAAACGAAGGCGATTATCCGTATACTAGCAATGGCGTTTTAGTGAATCGGAAGCCATTGGTTCATGAATGTGGCCCGACATGTCAGTGTTTTCCTAACTGCAGAAACCGAGTATCCCAAACCGGTTTAAAGCACCAAATGGAAGTGTTCAAAACTAACGATAGAGGTTGGGGTCTTCGATCATGGGACCCTATTCGATCTGGTGCTTTTATTTGCGAGTATGCTGGAGAAGTTATCGATAAAGCCAGGTTAAGTCAGCTTGTAAAGGAAGGAGATACCGATGAGTATGTTTTCGATACAACCCGTGTTTATGAATCTTTCAAGTGGAATTATCAGCCTAAGTTACTTGAAGAAGTGAGCACAAATGAATCTAGCGAGGATTATGCTTTACCACATCCTCTTATTATAAATGCCAAGAATGTCGGAAATGTGGCTCGATTCATGAATCATAGTTGCTTCCCAAATGTTTTCTGGCAACCTGTATTATATGAAGAGAACAACCAGTCCTTTCTCCATGTTGCGTTTTTTGCGTTGAGACATATTCCCCCAATGCAAGAGTTAACTTATGATTACGGATCTGAACGATCCGATCACACTGAGGGTAGCAGTGCACACAAAGGTAGAAAGAAATGCATGTGTGGATCATCACAATGTCGCGGTTCTTTTACTTGA 1998 0.4244 MEQGFGQNSVPPPGSIDKSKILDIKPIRYLIPVFSMTGQDPPSAQYPSGFSPFFPFGGPQETTTTRVTRRGRTMPAPIRSFKAGDTSSTMEDLNDNDDVYGSKRSGSSQRFKKKSKLYKALPIDLSALVGLTAAQRDDGSREVVNVVLMTFDALRRRLCQLVDAKELNTGLIKRADLKAGNILMTKGIRTNVTKRIGSVPGVEIGDIFFFRMELCIVGLHAQSMGGIDALHIHGDRDEETLAVSIVSSGEYDDDDEVGDVLIYTGQGGNFNKKDKHASDQKLHRGNLALDRSSRVHNEVRVIRGIKDIVNPNAKIYVYDGLYKIQDAWVEKAKGSGGGLFKYKLIRMPGQPSAFAVWKSIQKWKTGLPARTGLILADLSSGAESIPVSLVNEVDNVKAPAFFTYFHSLRHPKSFSLMQPSHGCNCSTKNACVPGDLNCSCIRRNEGDYPYTSNGVLVNRKPLVHECGPTCQCFPNCRNRVSQTGLKHQMEVFKTNDRGWGLRSWDPIRSGAFICEYAGEVIDKARLSQLVKEGDTDEYVFDTTRVYESFKWNYQPKLLEEVSTNESSEDYALPHPLIINAKNVGNVARFMNHSCFPNVFWQPVLYEENNQSFLHVAFFALRHIPPMQELTYDYGSERSDHTEGSSAHKGRKKCMCGSSQCRGSFT 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00185 665 Pfam SET domain 498 634 IPR001214 GO:0005515
Car05g00185 665 ProSiteProfiles Pre-SET domain profile. 421 484 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car05g00185 665 ProSiteProfiles Post-SET domain profile. 649 665 IPR003616 -
Car05g00185 665 SMART set_7 487 640 IPR001214 GO:0005515
Car05g00185 665 SUPERFAMILY SET domain 384 662 IPR046341 -
Car05g00185 665 SMART G9a_1 192 350 IPR003105 -
Car05g00185 665 ProSiteProfiles SET domain profile. 487 634 IPR001214 GO:0005515
Car05g00185 665 MobiDBLite consensus disorder prediction 634 649 - -
Car05g00185 665 Pfam SAD/SRA domain 196 350 IPR003105 -
Car05g00185 665 Pfam Pre-SET motif 379 479 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car05g00185 665 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 664 - -
Car05g00185 665 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 664 - -
Car05g00185 665 Gene3D SET domain 369 664 IPR046341 -
Car05g00185 665 Gene3D - 180 368 IPR036987 -
Car05g00185 665 MobiDBLite consensus disorder prediction 77 107 - -
Car05g00185 665 MobiDBLite consensus disorder prediction 82 106 - -
Car05g00185 665 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 665 IPR025794 GO:0016571
Car05g00185 665 MobiDBLite consensus disorder prediction 634 665 - -
Car05g00185 665 SMART preset_2 375 471 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car05g00185 665 ProSiteProfiles YDG domain profile. 197 346 IPR003105 -
Car05g00185 665 SUPERFAMILY PUA domain-like 179 369 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00185 Car-Chr5 4491763 4493760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00185 6 664 Su(var)3-9 homologs AT1G73100 51.327 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car05g00185 SAD_SRA 6.8e-46 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00185 05 4491763 4493760 Car07g02448 07 45450839 45454455 PCT