Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00176 ATGTCTTTCTTCAAATCCTATGGAAAAGTTAATGAACATGAGCAAATGATGCTTGAATCAAAAAGGAAAACAAGAAAGAGAATCACAATCATAAGCTTATCTTCAATAACCTTTGTTGGTATTGTAATTGCAGCTGTATTTGGAGTTGTTAACAACAACACAAAAAATGATCATGACAATGACAATGCTCCTCAAAATTATGTCACTAATTCTATGAAAGCTGTTTGTGACGTAACATTGTACAAGGATTCATGTTATAGTAGTCTTGGTTCAATTGTGAACTCGAGAAAAGATGTTCAACCCGAAGAATTGTTCAAAATTTCAATGAATGTGGCATTAACTCATGTATCCAAAGCTGTTGAGTATTTTAATGAGCATGGTGCTTTCAAAAAATTGATTGATGATAGTAGGACTAAAGAAGCTTTGAAAAATTGTGGGGATCTTTTGGGCCTTGCTGTTGATCATCTCAATAATTCATTGACTACTTATGGGGAAAATTCTTCACTTCTTCAAGTTTTTGATGATCTTCAAACATGGTTAAGTGCTGCAGGTACATACCAACAAACATGCATTGAAGGTTTTGAGGATACAAAACAAGAATTTAAGACAAGTGTAACAAACTATCTAAAAAATTCAACAGAGTACACAAGCAATAGTCTTGCCATCATTACATGGATTAACAAAGCTACAAACACTCTCAATTTAAGGCGCTTACTAAGTTTACATCAACATAATAAATTACCAAAATGGCTTCATTCAAAAGATAGGAAACTTCTTGGAACACAAGATTTGAGATCAAAAGCTAACATTGTTGTTGCAAAAGATGGAAGTGGGAAATATAAAACTATATCTGAGGCACTTAAACATGTTCCTAATAAGAGTAAGAAGAGGACTTTGATTTATGTGAAGAAAGGGATTTACTATGAAAATGTTAGAGTTGAGAAGACAAAATGGAATGTGATGATTATTGGCGATGGTATGAGTGCTTCAATTGTTTCTGGTAGACTTAACTTTGTGGATGGCACACCAACATTTTCAAGTGCAACATTTGCGGTGTTTGGAAAGAACTTCATAGCAAAAGACATGGGTTTCCGCAACACAGCCGGTCCACAGAAGCACCAAGCAGTGGCACTAATGACAAGTGCAGATCAAGCAGTTTACTATAAATGTTACATTGATGGATATCAAGACACTCTTTATGTTCATTCGAATCGTCAATTTTATAGAGAATGCAATATCTATGGAACAGTCGATTTCATTTTCGGAAATTCCGCAGTTGTGATACAAAACTGCAATATTTTGCCAAAGTTACCTATACATGGACAACAGAACACAATCACAGCACAAGGAAAAACTGATCCTAACATGAACACAGGTATCTCAATTCAATCCTGCAACATTTCGCCTTATGGAAACTTGAGTGGTGTTCAAACATATCTTGGAAGACCATGGAAGAATTACTCAACAACAGTTTACATGAGATCAAGAATGGAAAGTTTTATTAATCCAAATGGTTGGTTACCTTGGATAGGAAATTCAGCACCAAACACAATTTTTTATGCAGAATTTCAAAATGTTGGATTAGGTGCATCAACAAAGAATAGAGTGAAGTGGAAGGGTGTGAAAAGTATTACTAGTAAACAAGCTAGTAAGTTTTCAGTTAAGGCTTTTCTTCAAGGAGATAAATGGATTCCTGCATCAGGTGCACCTTTTAAGTCTGATATTTGA 1728 0.3466 MSFFKSYGKVNEHEQMMLESKRKTRKRITIISLSSITFVGIVIAAVFGVVNNNTKNDHDNDNAPQNYVTNSMKAVCDVTLYKDSCYSSLGSIVNSRKDVQPEELFKISMNVALTHVSKAVEYFNEHGAFKKLIDDSRTKEALKNCGDLLGLAVDHLNNSLTTYGENSSLLQVFDDLQTWLSAAGTYQQTCIEGFEDTKQEFKTSVTNYLKNSTEYTSNSLAIITWINKATNTLNLRRLLSLHQHNKLPKWLHSKDRKLLGTQDLRSKANIVVAKDGSGKYKTISEALKHVPNKSKKRTLIYVKKGIYYENVRVEKTKWNVMIIGDGMSASIVSGRLNFVDGTPTFSSATFAVFGKNFIAKDMGFRNTAGPQKHQAVALMTSADQAVYYKCYIDGYQDTLYVHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNILPKLPIHGQQNTITAQGKTDPNMNTGISIQSCNISPYGNLSGVQTYLGRPWKNYSTTVYMRSRMESFINPNGWLPWIGNSAPNTIFYAEFQNVGLGASTKNRVKWKGVKSITSKQASKFSVKAFLQGDKWIPASGAPFKSDI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00176 575 Pfam Plant invertase/pectin methylesterase inhibitor 71 222 IPR006501 GO:0004857
Car05g00176 575 SUPERFAMILY Pectin lyase-like 266 572 IPR011050 -
Car05g00176 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 226 IPR035513 -
Car05g00176 575 CDD PMEI-like_3 74 228 - -
Car05g00176 575 Pfam Pectinesterase 269 561 IPR000070 GO:0030599|GO:0042545
Car05g00176 575 SMART PMEI_2 67 222 IPR006501 GO:0004857
Car05g00176 575 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Car05g00176 575 Gene3D - 264 575 IPR012334 -
Car05g00176 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 65 226 IPR006501 GO:0004857
Car05g00176 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 227 IPR035513 -
Car05g00176 575 PANTHER PECTINESTERASE 5 573 - -
Car05g00176 575 PANTHER PECTINESTERASE 5 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00176 Car-Chr5 4116423 4120080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00176 7 575 Carbohydrate Esterase AT3G10710 55.439 0.0 664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00176 05 4116423 4120080 Car07g02440 07 45046646 45051200 PCT