Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00175 ATGTCATCACTACCAAAACCATTTTCCTTCAAtcttttatttctttttttcattttcttcacaccattacttctagctcaatcttctcctccttctccttcttcttcttcttcttcttctccttcGGTCGCGTGTAAAGCGACATTATATCCGAAACTATGCCGCTCGATACTATCTACCATCGGTTCTCTAAAACAAGCAAGAAAACTAGCAAAAGTGTTTGAAGATTTCCTCAAACGTCACAAATCTTCATCATCTTTAAACCATGAAGAGTTTGGTGCATTAGGTGATTGTAAAGACCTTAACAACCTCAATGTGGATTATTTAGGATCCATTTTTGATGAACTTAAATTAACTAGCTCTTCTTCAGATACAGCACTTGTTGATAAAATTGAAAGTTATCTTAGTGCTGTGGCTACTAATCACTACACTTGCTATGATGGGTTGGTTGTGACTAAAAGTAACATTGCAAATGCTCTTGCTGTTCCATTGAAGGATGTTACACAATTTTATAGTGTTTCACTTGGATTGGTAAGTGAGGCTTTGAATAAAAACATGAAAAGGAATAAGACACGCAAACATGGTCTTCCTAATAAGTCATTTAAGGTTAGGCAACCACTTGAGAAGCTCATCAAGCTTCTCCACACAAAATATAGTTGCAAAAAAACATCAAATTGTACAAGTACTAGAAATGAAAGGATTCTTAAAGAAAGTGATAGCCAAGGAATTCTATTAAACGACTTTGTGATTGTGAGTCCTTATGGGATAGACAACTATACTTCTATTGGAGATGCTATTTCTGCTGCACCAAATAACACAAAGCCAGAAGATGGATATTTTCTTATCTATGTTAGAGAAGGATACTATGAGGAATATGTAATTGTTCCAAAAGACAAGAAGAATATCCTTCTTGTTGGAGATGGTATTAACAAGACTGTCATCACTGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCGGGTGAAAGATTCATAGCAGTAGATATCACATTCAAAAACACAGCTGGTCCTGAAAAACACCAAGCAGTAGCAGTAAGAAACAACGCTGATCTCTCGACATTCTATCGATGCAGTTTCGAAGGTTATCAAGACACACTGTACGCGCACTCTTTAAGACAATTCTACAGAGAATGTGACATTTATGGCACAGTTGATTTCATATTCGGCAACGCTGCAGTAGTCTTCCAAAATTGCAACATATTCGCTAGAAAACCGTTGCCAAATCAAAAAAACGCGGTAACAGCACAAGGCCGAACCGATCCAAATCAAAACACTGGAATTTCAATCCAAAACTGTACAATCAATGCTGCACCTGATTTGGCTGCTGACTTAAATTCAACAATGAGTTACTTAGGTAGACCATGGAAAGTTTATTCAAGAACTGTTTATATGCAATCATATATCGGCGATTTTGTTCAACCTTCTGGATGGTTAGAATGGAATGGAACAGTTGGATTAGACACTATTTTTTATGGTGAATTCAATAATTATGGACCTGGTTCTTTAACTAACAATAGGGTACAATGGCCTGGTTATTTTCTTTTGAATGCTACACAAGCTTTGAATTTTACTGTTCTTAATTTTACTTTGGGAAATACTTGGCTTCCTGATACAGATATACCTTACACTGAAGGATTATTGAAATAG 1692 0.344 MSSLPKPFSFNLLFLFFIFFTPLLLAQSSPPSPSSSSSSSPSVACKATLYPKLCRSILSTIGSLKQARKLAKVFEDFLKRHKSSSSLNHEEFGALGDCKDLNNLNVDYLGSIFDELKLTSSSSDTALVDKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQFYSVSLGLVSEALNKNMKRNKTRKHGLPNKSFKVRQPLEKLIKLLHTKYSCKKTSNCTSTRNERILKESDSQGILLNDFVIVSPYGIDNYTSIGDAISAAPNNTKPEDGYFLIYVREGYYEEYVIVPKDKKNILLVGDGINKTVITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFKNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIFARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTINAAPDLAADLNSTMSYLGRPWKVYSRTVYMQSYIGDFVQPSGWLEWNGTVGLDTIFYGEFNNYGPGSLTNNRVQWPGYFLLNATQALNFTVLNFTLGNTWLPDTDIPYTEGLLK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00175 563 Pfam Plant invertase/pectin methylesterase inhibitor 44 176 IPR006501 GO:0004857
Car05g00175 563 PANTHER PECTINESTERASE 12 561 - -
Car05g00175 563 Pfam Pectinesterase 249 546 IPR000070 GO:0030599|GO:0042545
Car05g00175 563 CDD PMEI-like_3 44 180 - -
Car05g00175 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Car05g00175 563 SUPERFAMILY Pectin lyase-like 247 560 IPR011050 -
Car05g00175 563 Gene3D - 247 563 IPR012334 -
Car05g00175 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 181 IPR035513 -
Car05g00175 563 SMART PMEI_2 36 177 IPR006501 GO:0004857
Car05g00175 563 PANTHER PECTINESTERASE 12 561 - -
Car05g00175 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 179 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00175 Car-Chr5 4111378 4115460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00175 8 562 Carbohydrate Esterase AT3G10720 56.840 0.0 684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00175 05 4111378 4115460 Car07g02439 07 45040867 45046364 PCT