Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00174 ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGAAGAAGAAACGACTACAATTGATAACATGTTAGAAGGTGAAGAAAAATTGCACAATGGGGACGGCAGAAATATGATTGACACTGGCATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCCCCCACAGTTGATATGGTAATGTTTAAGGAAGATTCAAATCTTGAGCCACTTTCTGGCATGGAATTCGAGTCTCATGGAGAAGCTTATTCTTTCTACCAAGAATATGCTCGGTCAATGGGATTCAATACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATACGGAACAAAACGAGAATATGACAAATCCTTCAATCGACCACGAGCACGACAAAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGTTCTAAGACTGACTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCAGATGGGAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCACGACCTTTTACCCGCTCAGGCAGTAAGTGAACAAACAAGAAGAATGTATGCTGTGATGGCGAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAATCCGTTCGATAAAAATCGGAACTTGGGTTTGGAGTTTGGGGAGGCTAAACACATGCTTGATTTTTTTATTCAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGACATGACTATATCAACTTTTGTGATGTAGTATCGTTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGGGTGAACCAGCACTACCAATTTATATTACTTGGGTGTGCCTTGATATCAGATGAAAGTGCCACAACTTACTCTTGGTTGTTACGGACATGGCTGAAAGGCGTTGGTGGTCAAGTTCCAAAAGTGATAATTACTGATCATGACAAGACTTTGAAGTCAGTTATTTCAGATATCTTTCCTAGTGCTTGCCATTGTGTTTGCTTATGGCATATACTGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAACATGTGAATTTTATGGCAAAATTTGAAAAATGCATATTTAGGTCATTGACTAGTGATGATTTTGACAATAGATGGGAGAAAATTTTGGACAGATTTGAGCTTCGACAGGATGAATGCATGCGTTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTCTTAGGTGGTATGTCTACTCCCCAACGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAGGAAGACCTATGTGCCAGATTTTGTTAAACAGTATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCGAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTAAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGAACTTGCACTCATGCAGTATTCAAGAAGATTCAAGCTGAGATTATTGGGGCAGTGGCTTGTCATCCTAAAGCTGACAGGCAGGATGAGACTATCGTTGTTCATAGGGTGCATGATATGGAAACAGACAAAGACTTTTTTGTTGTGGTGAATGAAGTAAAATCAGAGTGTTCTTGTATATGTCGACTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAGTATTCTGGCCATTCAGTGTTCCCACCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGGTAAGGAGTGTAACGGGAGAAGAATCTGAGCATATGCTTGCCAGGGTGCAACGATACAATGATTTATGTCATCGTTCACTAAAACTGAGTGAAGAGGGATCATTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCACTAAACGATGCGCACAAAAGTTGTGTAAGTGTTAACAATTCTAGTAAGAGTCCTACCGAAGCTGGTACATCAGGGGCTCATGTTCAGCTTTCCGCTGAAGAAGATACCCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCGGAGGCAGAAGTGATGACTGTCGGGGCACTAGATAACTTGCAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAACTCTTGAAGGTTATTATGGCACACAACAGAGTGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGATGATTATTACGGGAATCAACAGACTCTTCAGGGACTGGGGCCAATAAGTTCCATACCAACCAGCCACGATAGTTATTACGGTGCACATCAAAGCATGCCCGGTTTGGCACAACTGGATTTTTTGCGAACTGGTTTCACATATGGCATTAGGGATGATCCTAATGTGAGAGCAGCACAATTGCACGAGGATCCATCAAGACATGCGTGA 2526 0.3943 MDIDLRLPSGEHDKEEEETTTIDNMLEGEEKLHNGDGRNMIDTGIEVHALNGGDLNSPTVDMVMFKEDSNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHDLLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKNPFDKNRNLGLEFGEAKHMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESATTYSWLLRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPSACHCVCLWHILGKVSENLAPVIKKHVNFMAKFEKCIFRSLTSDDFDNRWEKILDRFELRQDECMRSLYEDRKLWAPTFMKDVFLGGMSTPQRSESVNSFFDKYVHRKTYVPDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGTCTHAVFKKIQAEIIGAVACHPKADRQDETIVVHRVHDMETDKDFFVVVNEVKSECSCICRLFEYKGYLCRHALVVLQYSGHSVFPPQYILKRWTKDAKVRSVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQESYSIAFHALNDAHKSCVSVNNSSKSPTEAGTSGAHVQLSAEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDSYYGAHQSMPGLAQLDFLRTGFTYGIRDDPNVRAAQLHEDPSRHA 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00174 841 Pfam FAR1 DNA-binding domain 87 189 IPR004330 -
Car05g00174 841 Pfam SWIM zinc finger 567 600 IPR007527 GO:0008270
Car05g00174 841 MobiDBLite consensus disorder prediction 675 724 - -
Car05g00174 841 SMART 26again6 577 604 IPR006564 GO:0008270
Car05g00174 841 MobiDBLite consensus disorder prediction 130 162 - -
Car05g00174 841 Pfam MULE transposase domain 286 378 IPR018289 -
Car05g00174 841 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 776 IPR031052 GO:0006355
Car05g00174 841 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 45 776 - -
Car05g00174 841 MobiDBLite consensus disorder prediction 675 704 - -
Car05g00174 841 ProSiteProfiles Zinc finger SWIM-type profile. 566 602 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00174 Car-Chr5 4032390 4038712 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car05g00174 FAR1 3.8e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00174 05 4032390 4038712 Car05g00174 05 4032390 4038712 ECH
Car05g00174 05 4032390 4038712 Car07g02430 07 44786162 44793443 PCT