Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03617 AAGAAAATTGCTATGCAGGCATTCAACTGGGAGTCTCACAAATACAATTGGTGGACAAATTTAGAAAGCAAAGTTCCGGACATAGCTAAAGCTGGAATCACTTCAGCATGGTTGCCACCGCCAACTAATTCCTTCTCACCTGAAGGTTACGCTCCACAGAACCTTTACTCTCTGAATAGTAAATATGGTTCTGAGCATCAGTTAAAAGCTTTACTTCAAAAGTTCAAGCAACACAAAGTCCGAACAATGGCTGACATAGTTATCAATCATCGTGTTGGAACCACCCAAGGAAGTGGAGGGATGTATAATCGTTTTGATGGAATTCCATTACCGTGGGATGAACGTGCTGTAACATCATCTACTGGTGGACTGGGTAATCGAAACACTGGGGCCATTTTCCATGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGGAAAGATATCATAGGATGGCTTCGGTGGCTACGCCATAATGTAGGCTTTCAAGATTTTCGTTTTGATTTTGCAAAAGGCTATTCACCAAAATATGTGAAAGAATATATTGAAGGAGCAAAGCCATTGTTCTCTGTTGGTGAATATTGGGATACTTGCAACTACAAGGGTTCTATTTTGGACTATAACCAAGATAGCCATAGGCAACGAATACTCAATTGGATTGATGGCACTGGGATGCTTTCAACCGCATTTGACTTTACAACAAAGGGAATTCTCCAGGAAGCTGTCAAGCGAGAATATTGGCGTCTGCGTGATCCTCAAGGGAAGCCACCTGGTGTGATTGGGTGGTGGCCTTCACGATCAGTCACATTTATCGATAACCATGATACTGGTTCAACTCAGGCTCATTGGCCCTTCCCCTCTGAACATGTTATGGAGGGGTATGCATACATATTGACTCATCCTGGGACACCGTCAATTTTCTATGATCACTTTTATGACTGGAACAACTCAGTCCATGAGCAGATTGTGAAGTTGATTGACACTCGCAAGCGTCAAGGTATTCATAGCAGATCACCTATTAGGATTCTGGAGGCAAAGCACAACCTTTACTCAGCAATCATCGGGGAGAAACTCTGCATGAAGATTGGAGATGGTTCATGGTGCCCATCTGGGAGGGAATGGACACTATCAACCAGTGGCCACAATTATGCTGTATGGCATAAGTAG 1170 0.4308 KKIAMQAFNWESHKYNWWTNLESKVPDIAKAGITSAWLPPPTNSFSPEGYAPQNLYSLNSKYGSEHQLKALLQKFKQHKVRTMADIVINHRVGTTQGSGGMYNRFDGIPLPWDERAVTSSTGGLGNRNTGAIFHGFPNIDHTQDFVRKDIIGWLRWLRHNVGFQDFRFDFAKGYSPKYVKEYIEGAKPLFSVGEYWDTCNYKGSILDYNQDSHRQRILNWIDGTGMLSTAFDFTTKGILQEAVKREYWRLRDPQGKPPGVIGWWPSRSVTFIDNHDTGSTQAHWPFPSEHVMEGYAYILTHPGTPSIFYDHFYDWNNSVHEQIVKLIDTRKRQGIHSRSPIRILEAKHNLYSAIIGEKLCMKIGDGSWCPSGREWTLSTSGHNYAVWHK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03617 389 PANTHER ALPHA-AMYLASE 3 389 - -
Car04g03617 389 Gene3D - 335 389 IPR013780 -
Car04g03617 389 Gene3D Glycosidases 2 334 - -
Car04g03617 389 Pfam Alpha-amylase C-terminal beta-sheet domain 332 388 IPR012850 GO:0004556|GO:0005509|GO:0005975
Car04g03617 389 SUPERFAMILY Glycosyl hydrolase domain 335 389 - -
Car04g03617 389 SMART alpha-amyl_c2 331 389 IPR012850 GO:0004556|GO:0005509|GO:0005975
Car04g03617 389 SMART aamy 2 342 IPR006047 GO:0005975
Car04g03617 389 PANTHER ALPHA-AMYLASE 2-RELATED 3 389 - -
Car04g03617 389 PRINTS Alpha-amylase signature 266 278 IPR006046 GO:0004556|GO:0005975|GO:0043169
Car04g03617 389 PRINTS Alpha-amylase signature 163 174 IPR006046 GO:0004556|GO:0005975|GO:0043169
Car04g03617 389 PRINTS Alpha-amylase signature 79 90 IPR006046 GO:0004556|GO:0005975|GO:0043169
Car04g03617 389 PIRSF Alpha-amylase_plant 1 389 IPR013775 GO:0004556|GO:0005509|GO:0005975
Car04g03617 389 SUPERFAMILY (Trans)glycosidases 10 319 IPR017853 -
Car04g03617 389 Pfam Alpha amylase, catalytic domain 23 91 IPR006047 GO:0005975
Car04g03617 389 CDD AmyAc_arch_bac_plant_AmyA 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03617 Car-Chr4 65622468 65625364 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03617 04 65622468 65625364 Car04g03617 04 65622468 65625364 ECH