Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03608 ATGACTCAAGACGTAGACATGAAAGATCACCCAGCACCTTCTCATTCCATTTCTTCAGCTATTCCATCCACATTGCAAAATTTGAAAGAAATAGCATCAATCATTGAAACCGGTTCAAATTCCAAGGAAGTTCGCAGAATTTCTCGTGCCGTGCGCCTTACGATGGCGTTGAGGCCCAAACTAACAGCGCCAATTCTCTCATCTTTCATCACTCACGTTCTTCCTTTTGCTTCTGAGCCTCATTCTAGGTTATCTTCTTATCTTCCCAATCCCAAGGATGATGGTAATGAGATGGAAGTGGACACTGCAACATCTGTAGCTATTCAAACCCCACCCAAGCACTTGTTGCCTGAGCTAGAAATCTATTGTTATTTCCTTGTGCTTCTTTTTCTGATTGATCAGAAACGTTACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGATCGGCTCAAAAACCTGAATAGAAGAACTGTTGATGTTATTGCTTCGAGACTGTTCTTTTATTATTCATATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGAGGCAACCTCTTTCAGTTGCACCGGATTGCTACCCTGCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAAAAGTTGAGGTCTAAAGCTCCACGATTTGAGGCACATTCAAACCAGCAGTTCTGTCGCTATCTCTTCTACCTTGGGAAAATTCGGACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTTCTGCAGGCTGCTCGTAAAGCACCGGTTGCCGCTCAGGGTTTTCGGATTCAGTGTAACAAGTGGGCGATTATAGTGCGTTTACTGTTGGGAGAAATTCCTGAGAGGACTATCTTCGTGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTCCGGATTGGTGATTTAGAGCTGTTTAGGAATGTTGCAGATAAGTATGCTACCACTTTCAATACAGATGGAACCAATAACTTAATCGTTCGATTGCGTCATAATGTCATCCGGACTGGTTTGCGCAACATCAGTATATCATATTCTCGCATCTCCCTGGCTGATGTAGCTCAGAAGTTGAGGTTGAGCTCCGCAAATCCCATTGCTGATGCCGAATGCATTATATCAAAGGCTATCCGTGATGGGGCAATTGATGCAACATTGGATCATACTAATAAATGGATGGTGTCTAAGGAAACTGGAGATATCTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTCGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGTTTTCCAAAAAACACTCACAAGGAAAAGGAAATTGCTGAGAAGCGTAGAGAGAGGCAACAACAAGAGCAAGAACTGGCAAAACATATtgaagaggaagatgatgacgatgacttctga 1476 0.4201 MTQDVDMKDHPAPSHSISSAIPSTLQNLKEIASIIETGSNSKEVRRISRAVRLTMALRPKLTAPILSSFITHVLPFASEPHSRLSSYLPNPKDDGNEMEVDTATSVAIQTPPKHLLPELEIYCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLFFYYSYSYELTGDLAEIRGNLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVADKYATTFNTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSANPIADAECIISKAIRDGAIDATLDHTNKWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03608 491 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
Car04g03608 491 SUPERFAMILY "Winged helix" DNA-binding domain 351 424 IPR036390 -
Car04g03608 491 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
Car04g03608 491 Pfam PCI domain 314 419 IPR000717 -
Car04g03608 491 SMART PINT_4 348 441 IPR000717 -
Car04g03608 491 Gene3D - 245 452 - -
Car04g03608 491 MobiDBLite consensus disorder prediction 1 20 - -
Car04g03608 491 MobiDBLite consensus disorder prediction 456 491 - -
Car04g03608 491 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 489 - -
Car04g03608 491 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 - -
Car04g03608 491 Coils Coil 457 485 - -
Car04g03608 491 MobiDBLite consensus disorder prediction 456 480 - -
Car04g03608 491 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03608 Car-Chr4 65542453 65547475 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03608 04 65542453 65547475 Car04g03608 04 65542453 65547475 ECH
Car04g03608 04 65542453 65547475 Car05g03287 05 77592695 77596888 PCT