Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03577 ATGGGAGTTCCGGCGTTCTATAGATGGCTTGCGGAGAAATATCCTATGGTGATTGTCGACGCCGTCGAAGAGGAACCGGTTGTAATCGAAGGTGTTTCAATCCCTATTGATACCAGTAAAGAAAACCCTAACAACATCGAATATGATAATCTTTATCTTGATATGAATGGAATCATTCATCCTTGCTTCCATCCAGAAGATAGGCCCTCACCGACGTCTTTTGAGGAGGTGTTTCAGTTGATGTTTGATTATATTGATAGGCTGTTTAACATGGTGCGGCCACGGAAGCTGCTCTTTATGGCTATTGACGGTGTTGCACCGAGGGCTAAAATGAATCAACAGCGGTCTAGGCGGTTTAGGGCGGCTAAAGATGCAACTGATGCGGCTGCTGAAGAATCAAGGTTAAGGGAGGAATTTGAGAGAGAGGGAAGAAAGCTTCCTCCTAAAGAAGAGTCACAAACTTTCGATTCAAATGTAATCACACCTGGAACTGAATTCATGGCTGTTTTGTCTATTGCACTTCAGTACTATATTCATCTTAGGTTGAATAATGATCCCGGTTGGACAAATATCAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTTCAAAGAAATCTTGAGGGATGTGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGGTCTTGCTACTCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGATAAATGCTTCGTGTGCGGTCAGATGGGTCATATGGCTGCAGACTGTCAAGGAAAGGCAAGAAAGAAAGCAGGAGAATTTGATGAAAAAGGCAATGCTGTTGTTCCTAAAAAGCCGTTCCAGTTTCTGAACATCTGGACTCTGAGGGAATATCTGGAGTACGAGATGAGAATACCTAATCCTCCATTTGAGATTGATTTTGAATGCATATTGGATGATTTTATCTTCATATGCTTTTTTGTTGGCAATGATTTTTTACCACATATGCCTACACTTGAGATTCGCGAGGGTGCAATTAACTTGCTGATGGCAGTATACAAGAAGGAATTTAGCGAAATGGGTGGTTATTTGACAAATGGTAGTAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAGGCTGTTGGATCATATGAAGATAGAATATTCCAGAAAAGAGGTCGATTGCATCAGCGACAAGTGGAAAGAATCAAGCGTCAGAAGGCACAAGTAAGAGGAGATGATGCTGCGCCTCAAGTTCAACCTGAATCTGTAGTTGCAGTCTCAAGATTCCACGGTTCTCGTCTTGCTTCAGCTCCAGCACCTTCACCATTTCAACATTCTGGGCATCATGATTCACATATGTCCCCATCAGCTAGAAAAGGCGATAAAGAAGTTCTTGAGAGGCCCAGTAAAGTTTCTAGGTTATCTTCAGGAACATCTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAGTCTTGAAATAGATGTTGAAGATAACAAAGACGAATTGAAAACAAAACTGAAAAGTATACTTCGTGATAAATCTGATGTATTCAACTCAAAAGTTTCCCACGTGGACAAGATTAAATTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAAGAAAAATTTTCTGCTCACACTCCCGAGGAACTTGATGCTATACGGAAAGATGTTGTCTTGAAATACACTGAAGGTCTATGTTGGGTGATGCATTATTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCGTCAGATCTTAAGGACCTTGGTGAGCTTAATATTAACTTTCAGTTGGGTACTCCATTCAAACCATTTGACCAGCTTCTTGGAGTTTTTCCGGCTGCAAGCTCTCATGCTCTGCCTGAGCCATATAGGAAACTTATGACTGATCCAGACTCACCCATTATTGATTTTTATCCAATCGATTTTGAAGTGGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATAGCAAAGTTGCCGTTTATTGATGAAGTCCGTCTTCTTGAGGAAGTTCGGAAAATAGAGAACTTGTTAACACCAGAGGAAAAACGACGAAATGCAATAATGTTCGAATTACTTTTTGTGAATTCATGTCATCCTCTCTCTGCGTGCATTAGTACACTCGACAACAAATGTAGAAACATGTCTAACATTGAACGTGCTGATGTCAAGGAAAAAATCGATCCCATAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCCATCTTCAGGTCCCCTGTAGCAGGCATGGATGACATCATGGATAATCATGTCATATGTGCAATATATAGACTTCCAGATGTGCATGAGCATATTACCCGACCGCCACATGGAGTTATATTTCCAACAAAGATTGTGACGATTGGGGATCTAAAACCTGAACCTGCTCCATGGCATGAAGATCCTGGTAGGAGATTTGGGGAAAGTGGAAGGAAAAACCCTCCAGGATCTATTTCCGGCCGGGAGCTTGGAGCGGCAGCACACAGGCTTGTTGTGAATTCTTTACCGGGCAGGCCAGATAGGTACCGTCTCATCAATGGAATGCCTAATGATGCACCAATGGTTCATAGGCAACCACGCCCTCACAATAACTATGAACCTCCTCACAATAACTATGAACCTCCTCACAATAACTATGAACCTGCTCACAATAACTATGAACCACACCCTGGCTATAATTATGAATCACACCCAGGATATGCGGCAATGCCACCCCTGCCTTTATCAGCTCCTCAGCCGTTTGTACCTTACGCTTCTGTCTCTACTGCACATTACGGTTATAACCAACCATACTCACGGCCGATAGTGCCCAGTCCTTATCATCATCATCAATCAAATTCCTTTGCGGGAAATGACTATCAACATCCTAGATCACATCAATATGAAAGAAATACCCATGTTAATGGCGGCAATGCAAGGCATTCGTCAGGAAACCATCAAAATCCTCAGTTTACAAATGCACAAGGTTCATTTCCCAGTCACAGTCACCATCACGATGCTGGTCGCCATAGCCAAAACTTCCAACCGCATAGAGCTTCTGACCAGCATTGGACTCCACGGGGTAACCCTAATGGGCACAGGGAATATACTCAACATTCGGCTAATAATTATTCTGTATTAGATAGAAGATCAAGTAGGAAGCCAATGCCACCACCTAATCGCTAA 3276 0.4228 MGVPAFYRWLAEKYPMVIVDAVEEEPVVIEGVSIPIDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFQLMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDATDAAAEESRLREEFEREGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWTNIKVILSDANVPGEGEHKIMSYIRLQRNLEGCDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVFTPGQDKCFVCGQMGHMAADCQGKARKKAGEFDEKGNAVVPKKPFQFLNIWTLREYLEYEMRIPNPPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFSEMGGYLTNGSKPNLSRVEHFIQAVGSYEDRIFQKRGRLHQRQVERIKRQKAQVRGDDAAPQVQPESVVAVSRFHGSRLASAPAPSPFQHSGHHDSHMSPSARKGDKEVLERPSKVSRLSSGTSVAAAIVEAENSLEIDVEDNKDELKTKLKSILRDKSDVFNSKVSHVDKIKLGEPGWKERYYEEKFSAHTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNINFQLGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPDSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLEEVRKIENLLTPEEKRRNAIMFELLFVNSCHPLSACISTLDNKCRNMSNIERADVKEKIDPIERDTCSGGMNGYISLCGGEPCPPIFRSPVAGMDDIMDNHVICAIYRLPDVHEHITRPPHGVIFPTKIVTIGDLKPEPAPWHEDPGRRFGESGRKNPPGSISGRELGAAAHRLVVNSLPGRPDRYRLINGMPNDAPMVHRQPRPHNNYEPPHNNYEPPHNNYEPAHNNYEPHPGYNYESHPGYAAMPPLPLSAPQPFVPYASVSTAHYGYNQPYSRPIVPSPYHHHQSNSFAGNDYQHPRSHQYERNTHVNGGNARHSSGNHQNPQFTNAQGSFPSHSHHHDAGRHSQNFQPHRASDQHWTPRGNPNGHREYTQHSANNYSVLDRRSSRKPMPPPNR 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03577 1091 MobiDBLite consensus disorder prediction 972 1091 - -
Car04g03577 1091 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Car04g03577 1091 PANTHER 5'-3' EXORIBONUCLEASE 1 890 - -
Car04g03577 1091 MobiDBLite consensus disorder prediction 117 151 - -
Car04g03577 1091 MobiDBLite consensus disorder prediction 1000 1030 - -
Car04g03577 1091 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Car04g03577 1091 Coils Coil 122 142 - -
Car04g03577 1091 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Car04g03577 1091 Gene3D - 612 713 - -
Car04g03577 1091 PANTHER 5'->3' EXORIBONUCLEASE 1 890 IPR027073 -
Car04g03577 1091 MobiDBLite consensus disorder prediction 1043 1079 - -
Car04g03577 1091 MobiDBLite consensus disorder prediction 976 991 - -
Car04g03577 1091 CDD PIN_XRN1-2-like 51 312 - -
Car04g03577 1091 Pfam Xrn1 helical domain 325 827 IPR041412 -
Car04g03577 1091 MobiDBLite consensus disorder prediction 450 486 - -
Car04g03577 1091 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Car04g03577 1091 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Car04g03577 1091 MobiDBLite consensus disorder prediction 831 845 - -
Car04g03577 1091 MobiDBLite consensus disorder prediction 830 858 - -
Car04g03577 1091 MobiDBLite consensus disorder prediction 892 929 - -
Car04g03577 1091 Gene3D - 145 386 - -
Car04g03577 1091 Gene3D - 1 133 - -
Car04g03577 1091 PIRSF Exonuclease_Xrn2 1 1076 IPR017151 GO:0004534|GO:0005634|GO:0006139
Car04g03577 1091 MobiDBLite consensus disorder prediction 113 156 - -
Car04g03577 1091 MobiDBLite consensus disorder prediction 466 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03577 Car-Chr4 64960700 64970543 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03577 04 64960700 64970543 Car04g03577 04 64960700 64970543 ECH