Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03572 ATGGGTGCTGAAATTCCACAAGATGGATTGAAGAAGAAACTCGAGTACCTATCACTAGTATCCAAAGTATGCACCGAGTTAGAATCCCACACCGGTACCGGCGACAAGGTTCTCGCCGAGTTCATTACAGAGTTAGGTCATTCATCTGAAACCGTCGAGGAATTTGACTCCAAACTCAAACTAAACGGCGCCGAAATGCCTGATTACTTTGTCCGTACACTCCTCACCATTATCCACGCCATTCTCCCTCCAAAACCTAAGAAGGAGAAAGAAATTCCGAAAGAGAATGCGGCGTCGAAGACCAAGTTTAAGGCGTTGGCGATTTCGGATGATAGGGATCGTGCCAAGGAGCTCCGGATTGAGATTGAATCCGAAGCGAGGGAAAAACAAAAGCAAAAGGAACCATTGGAGAGATATCAAAGAGATAGGGTTGAAGATGATGGTTCTAGAGATAGGGATAGAAGAGATAGGCACAAAGATAGGTATGATAGAGATAGAGACGATAAAAGGGATTATAGAAGGAAAAATgatagagatagagatagagatagagatagagacaaggatagagatagagatatggatagagaaagggatagggatagggatagGGATCGATATGAGAGGCGAAGGAGAGATGAGTATGAAGAGTATGAAGGTGGTGGTGGAAGGGAGGAGAATGGTGACGAGAAAGGTTATAGAGATAGAGATTCGAAGAGGCGTGATGGTGGTTCTGGTGAAATTGAGTTGTATATGGTTTATAAAGGAAGAGTGTCTAGGGTGATGGAAACTGGGTGTTTTGTTCAGTTGGATGATTTTAGAGGGAAGGAGGGTTTGGTTCATGTTTCTCAGATTGCTACTAGGAAGATTGCGAATGCTAAAGAGGTTGTTAAAAGGGATCAAGAGGTTTATGTCAAGGTGATTTCAGTTTCTGGTTCGAAGTTGAGTCTTTCCATGAGGGATGTTGATCAGCATAGCGGGAAGGATCTTCTTCCGTTGAAGAAGAGTTCGGAGGAGGAGGCTTTTCGGACTAATCCACAGGATTCAAAGGATGGGCTGGTGGCTAGGACAGGGCTTTCTGGGATTAGGATTGTGGAGGAGGATGATGTTGGATCTTCGCGTAGGCCGCTGAAGAGAATGAGTTCTCCTGAGAGATGGGAAGCAAAACAGTTGATTGCTTCGGGGGTTTTGAGTGTTTCGGAGTATCCGACTTATGATGACGAGGGAGATGGAGTGATGTACCAAGAAGAAGGAGCTGAGGAAGAGCTTGAGATTGAGATGAATGAGGATGAACCAGCCTTCTTGCAAGGGCAGAGCAGATACTCAATGGATATGTCTCCTGTTAAGATCTTTAAGAATCCAGAAGGCTCTCTGGGTCGTGCTGCTGCACTACAGTCTGCGCTTATAAAGGAACGCAGGGAAGTAAGAGAACAGCAGCAGCGTACCATGCTTGATTCAATCCCAAAGGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAAGAGTTGAGGGGTGTTGGCTTATCGGCCTATGATATGCCAGAATGGAAGAAGGATGCCTATGGGAAGACCATTACTTTTGGGCAAAGGTCAAAACTTTCTATTCAGGAACAAAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTTTTGGTTGTGATTGGTGAAACCGGTTCGGGTAAGACTACTCAGGTTACACAATATCTTGCTGAAGCAGGTTACACCACAAGAGGTAAAATTGGATGTACTCAACCACGTAGGGTGGCTGCAATGTCAGTGGCAAAGAGAGTTGCAGAAGAGTTTGGATGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCCGATACCGTAATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCATGAGAGAACTATTCATACTGATGTTCTTTTTGGATTGCTAAAGCAGCTGGTGAAGCGTAGACCTGAGTTGCGATTGATTGTCACATCTGCTACTCTTGATGCTGAAAAATTTTCAGGTTACTTCTTTAACTGTAACATCTTCACAATTCCTGGGAGAACTTTTCCTGTGGAGATACTTTATACTAAACAGCCAGAAAGCGATTACCTGGATGCAGCTTTGATCACTGTCCTACAGATCCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGTCAGGAAGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGAGAATGAAGGGATTAGGTAAGAATGTCCCAGAACTGATCATTTTACCTGTTTATAGTGCCCTTCCAAGTGAAATGCAATCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTCATTGATCCGGGCTTCGCTAAGCAAAATGTTTATAATCCGAAGCAAGGTCTCGATTCGTTGGTGATAACTCCAATATCACAAGCGTCAGCCAAACAAAGAGCTGGACGTGCAGGCCGTACTGGACCTGGAAAGTGTTATCGCCTCTATACAGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAATCTTGGCATGACTACTCTTAGCATGAAAGCTATGGGCATAAATGATCTTCTTTCGTTTGATTTTATGGATCCACCATCACCCCAAGCACTTATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTAGATGAAGAAGGTCTTCTAACCAAATTGGGGAGGAAAATGGCTGAATTTCCTTTGGATCCACCACTATCCAAGATGCTGCTTGCCAGTGTAGACCTTGGTTGCAGTGACGAGATTTTGACCATAATTGCCATGATCCAAACTGGCAATATTTTTTACAGGCCCAGGGAAAAACAAGCCCAAGCAGATCAGAAAAGGGCAAGGTTTTTCCAGCCAGAAGGTGACCATCTTACGTTACTTGCTGTTTACGAGTCCTGGAAAAATAAAAACTTTTCTGGACCCTGGTGTTTTGAGAACTTTGTTCAGTCTCGATCGTTGAGAAGAGCCCAGGATGTTAGGAAACAACTTCTTACCATCATGGATAAGTACAAATTGGATGTTGTCAGTGCTGGAAAAAACTTCACCAAGATTAGGAAGGCTATCACTGCAGGGTTCTTTTTTCATGCAGCTAGAAAGGACCCCCAGGAAGGTTACAGAACACTAGTTGAGAATCAACCTGTATACATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATATACCATGAGCTTGTAATGACAACTAAGGAATATATGCGTGAGGTCACTGTCATAGACCCTAAATGGCTTGTTGAGTTGGCTCCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAACGGAAGCGTCAAGAACGCATTGAACCACTTTATGATAGATACCATGAGCCAAATTCATGGCGTTTGAGTAAACGCCGAGCATGA 3612 0.4269 MGAEIPQDGLKKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGHSSETVEEFDSKLKLNGAEMPDYFVRTLLTIIHAILPPKPKKEKEIPKENAASKTKFKALAISDDRDRAKELRIEIESEAREKQKQKEPLERYQRDRVEDDGSRDRDRRDRHKDRYDRDRDDKRDYRRKNDRDRDRDRDRDKDRDRDMDRERDRDRDRDRYERRRRDEYEEYEGGGGREENGDEKGYRDRDSKRRDGGSGEIELYMVYKGRVSRVMETGCFVQLDDFRGKEGLVHVSQIATRKIANAKEVVKRDQEVYVKVISVSGSKLSLSMRDVDQHSGKDLLPLKKSSEEEAFRTNPQDSKDGLVARTGLSGIRIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03572 1203 SMART ultradead3 548 732 IPR014001 -
Car04g03572 1203 Gene3D - 522 725 IPR027417 -
Car04g03572 1203 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 665 674 IPR002464 -
Car04g03572 1203 CDD S1_DHX8_helicase 251 327 - -
Car04g03572 1203 SMART ha2_5 941 1031 IPR007502 GO:0004386
Car04g03572 1203 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 921 IPR001650 -
Car04g03572 1203 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 560 723 IPR014001 -
Car04g03572 1203 PANTHER ATP-DEPENDENT RNA HELICASE 88 1203 - -
Car04g03572 1203 MobiDBLite consensus disorder prediction 126 244 - -
Car04g03572 1203 Coils Coil 108 132 - -
Car04g03572 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 1073 IPR027417 -
Car04g03572 1203 Pfam Helicase conserved C-terminal domain 748 880 IPR001650 -
Car04g03572 1203 Pfam DEAD/DEAH box helicase 556 706 IPR011545 GO:0003676|GO:0005524
Car04g03572 1203 ProSiteProfiles S1 domain profile. 251 320 IPR003029 GO:0003676
Car04g03572 1203 CDD DEXHc_DHX8 545 723 IPR044762 GO:0000398|GO:0003724|GO:0005524
Car04g03572 1203 Pfam Helicase associated domain (HA2) 942 1030 IPR007502 GO:0004386
Car04g03572 1203 Pfam S1 RNA binding domain 253 313 IPR003029 GO:0003676
Car04g03572 1203 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1088 1163 IPR011709 -
Car04g03572 1203 Coils Coil 461 481 - -
Car04g03572 1203 SUPERFAMILY Nucleic acid-binding proteins 248 324 IPR012340 -
Car04g03572 1203 Gene3D - 925 1023 - -
Car04g03572 1203 SMART S1_6 249 320 IPR022967 -
Car04g03572 1203 Gene3D - 246 331 IPR012340 -
Car04g03572 1203 CDD SF2_C_RHA 727 888 - -
Car04g03572 1203 Gene3D - 726 900 IPR027417 -
Car04g03572 1203 PANTHER - 88 1203 - -
Car04g03572 1203 SMART helicmild6 776 880 IPR001650 -
Car04g03572 1203 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03572 Car-Chr4 64857213 64861900 Dispersed/Transposed