Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03556 ATGAAGATCCTTTGCGACGTTTGCAACAATCACGATGCTTCCTTTTTCTGTACCGCCGACGAAGCCGCTCTCTGTCTCTCCTGCGACCACCGCGTCCACCACGCTAACAAACTCGCTTCTAAACATAACCGTCTCTCTCTTCTTCATCCTTCTCCCAACCTATCCCCTCTCTGCGATATTTGTCAGGACAGAAGAGCTTTTGTTTTGTGTAAACAAGATAGAGCCATTTTATGCAACCATTGTGATTCCTCCATTCATTCCGTCAACGAATTTACCGTTAATCATGACAGGTTTCTTCTCGCTGGTGTTAAGCTTTCTACGATTTCTTCTTCTTTGACTTCTTCATCATCAACGAATTCTAAGTCAAATCTTGTTGATTCTTCTTCTTTGATTGATAAATCCGTTGTTGTTCCTTCCTCAACATCTATTATCCACAACGATGCTTTGGAAGGAACTGTTAGTGGTGGTTCAACTATATCTCAGTACTTGATTGAAACTCTACCTGGTTGGCAAGTTGATGAttttctcgattcttcttctgttccatttgctttctctaagGGTGATGATTTGTTTGATGGTGGGATTGAACAAAATCTTGATTCAATATTCCCCAATAGTAACATGGGGATCTGGGTTCCTCAAGCACCACCAACACCTCTATATTCTTCATCACAAATAATGATGGGACAGAGTGAGACAAAGAAGGGGAACAACAGAACAAGGTTGAGGGATGATCATGATGGTAGTGTTTTCACTGTTCCACAGATTAGTCCTGTTTCTAATTCCAAGAGATCAAGATATCTATGGTAG 813 0.3936 MKILCDVCNNHDASFFCTADEAALCLSCDHRVHHANKLASKHNRLSLLHPSPNLSPLCDICQDRRAFVLCKQDRAILCNHCDSSIHSVNEFTVNHDRFLLAGVKLSTISSSLTSSSSTNSKSNLVDSSSLIDKSVVVPSSTSIIHNDALEGTVSGGSTISQYLIETLPGWQVDDFLDSSSVPFAFSKGDDLFDGGIEQNLDSIFPNSNMGIWVPQAPPTPLYSSSQIMMGQSETKKGNNRTRLRDDHDGSVFTVPQISPVSNSKRSRYLW 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03556 270 CDD Bbox1_BBX-like 4 47 - -
Car04g03556 270 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 268 - -
Car04g03556 270 SMART bboxneu5 4 47 IPR000315 GO:0008270
Car04g03556 270 SMART bboxneu5 53 100 IPR000315 GO:0008270
Car04g03556 270 Gene3D Classic Zinc Finger 1 93 - -
Car04g03556 270 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car04g03556 270 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Car04g03556 270 CDD Bbox1_BBX-like 57 100 - -
Car04g03556 270 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Car04g03556 270 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Car04g03556 270 MobiDBLite consensus disorder prediction 254 270 - -
Car04g03556 270 MobiDBLite consensus disorder prediction 231 270 - -
Car04g03556 270 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03556 Car-Chr4 64720927 64722514 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Car04g03556 zf-B_box 2.9e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03556 04 64720927 64722514 Car04g03556 04 64720927 64722514 ECH
Car04g03556 04 64720927 64722514 Car05g03409 05 78605769 78607813 PCT