Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03554 ATGGACCGCAGTTTCCTCTTAGCTCTCCTCCTCTTCTCCGTCGTAGCAACCGCCACAAAGGACGACAACAACGACGACTTTCTGATCCGTCAAGTCACTGATCACGAAGATGATCAACTACTGAACGCAGAGCACCACTTTACAACCTTCAAGTCTAAGTTCAGTAAAAGCTACGCAACAAAAGAGGAGCACGATTACCGATTCGGCGTGTTTAAGTCAAATCTTAAGAAAGCGAAGCTCCATCAGAAGCTCGATCCTTCCGCGGAGCACGGAGTCACTAAGTTTTCAGACTTAACGGCGTCTGAGTTCCGTCGCCAGTTTCTTGGACTTAAAAAACGTCTCCGTCTACCGGCTCACGCTCAGAAGGCTCCGATCTTACCTACTAACAACCTTCCTGAGGACTTCGATTGGCGTGAGAAAGGAGCCGTCACTCCCGTCAAGGACCAGGGTTCGTGTGGTTCGTGTTGGGCGTTTAGCACAACGGGAGCGTTGGAAGGAGCAAATTATTTGGCTACTGGGAAATTAGTGAGCCTTAGTGAGCAACAGCTTGTGGATTGTGATCATGTGTGTGATCCAGATGAATATAATTCGTGTGACTCGGGCTGTAATGGTGGATTGATGAACAATGCATTTGAATACCTACTCCAGTCTGGGGGAGTAGTGCGAGAACAGGACTATTCTTACACAGGAAGAGATGGCTCCTGCAAATTTGACAAAAGCAAGATTGCTGCTTCCGTATCTAATTTCAGTGTTGTTTCCGTTGACGAAGACCAAATTGCTGCAAATTTAGTAAAGAATGGCCCTCTTGCAGTTGCTATTAACGCAGCCTGGATGCAAACATATATGAGTGGTGTCTCATGCCCATACATCTGTGCAAAATCGCGTTTGGATCATGGGGTTCTTCTAGTTGGTTTTGGAAATGGTTTTGCTCCCATCCGATTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAATTGGGGTGAGGAAGGATATTACAAGATCTGCAGAGGTCGAAATATATGTGGAGTGGATTCAATGGTCTCAACTGTAGCTGCAGTTCATGCATCCAACAATTAA 1089 0.461 MDRSFLLALLLFSVVATATKDDNNDDFLIRQVTDHEDDQLLNAEHHFTTFKSKFSKSYATKEEHDYRFGVFKSNLKKAKLHQKLDPSAEHGVTKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTNNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGANYLATGKLVSLSEQQLVDCDHVCDPDEYNSCDSGCNGGLMNNAFEYLLQSGGVVREQDYSYTGRDGSCKFDKSKIAASVSNFSVVSVDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYICAKSRLDHGVLLVGFGNGFAPIRLKEKPYWIIKNSWGQNWGEEGYYKICRGRNICGVDSMVSTVAAVHASNN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03554 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
Car04g03554 362 Pfam Papain family cysteine protease 131 353 IPR000668 GO:0006508|GO:0008234
Car04g03554 362 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Car04g03554 362 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Car04g03554 362 PRINTS Papain cysteine protease (C1) family signature 319 325 IPR000668 GO:0006508|GO:0008234
Car04g03554 362 SMART pept_c1 131 355 IPR000668 GO:0006508|GO:0008234
Car04g03554 362 SUPERFAMILY Cysteine proteinases 43 353 IPR038765 -
Car04g03554 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 319 338 IPR025661 -
Car04g03554 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Car04g03554 362 CDD Peptidase_C1A 132 354 IPR039417 -
Car04g03554 362 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Car04g03554 362 SMART Inhibitor_I29_2 47 103 IPR013201 -
Car04g03554 362 PANTHER CYSTEINE PROTEASE RD19C-RELATED 24 356 - -
Car04g03554 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 356 - -
Car04g03554 362 Gene3D Cysteine proteinases 16 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03554 Car-Chr4 64681653 64685401 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03554 04 64681653 64685401 Car04g03554 04 64681653 64685401 ECH