LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g03552	ATGTTGAAATCAGGAATTGGTATTGAAGAAAGAAAACAGTTGAAAAAACCAGCTCAAGCTAGTTCAAGAAAAGGTTGTATGAGAGGTAAAGGTGGTCCTGAAAATGCAAGTTGCACATACAAAGGTGTGAGACAGAGAACTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCTAATCGTGGTGCTCGTCTTTGGCTTGGTACTTTTGAAACTTCTCATGAAGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAGCTTTATGGTTCTGATGCTAAACTCAATCTTCCAGAACTTTCTGTTACAACAAACTCCACAACCACCCAACAAATTCCTCAAATTAATATTCCTCATAACAACAATAATATTAAAAACTTTTCTGTTTCTTCAACCGTCCacaacaacaactcgtgcttcaacaataacaataacaataccaacaacTCTGTTTTCGGAGCCATATATAGTAGTAGTGATAATTCCATTGTTTCAATCCCATTGGAACAACAAGTAGTTGAAAGCAGTTATACAAAGCACATGGATCATAGTGATTCCTTTTTTGGGACAGTGAATTATGAATCAACTATGCCTGTTGTTGATGATGATTCAATATGGACAGAAGCTGCTATGTCTTTAGATGCTGCTATTTCTATGGATTTTCCTATGATTTCTGATGATGATGGAATTTATTCAACTGGAAATTTTTCTGAAGTTGCTGCTTGGGATTCTCTTCAAACTCCATGGTGCATGTAA	750	0.3467	MLKSGIGIEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSVTTNSTTTQQIPQINIPHNNNNIKNFSVSSTVHNNNSCFNNNNNNTNNSVFGAIYSSSDNSIVSIPLEQQVVESSYTKHMDHSDSFFGTVNYESTMPVVDDDSIWTEAAMSLDAAISMDFPMISDDDGIYSTGNFSEVAAWDSLQTPWCM	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g03552	249	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Car04g03552	249	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Car04g03552	249	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Car04g03552	249	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	14	234	-	-
	Car04g03552	249	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Car04g03552	249	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	14	234	-	-
	Car04g03552	249	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Car04g03552	249	MobiDBLite	consensus disorder prediction	1	17	-	-
	Car04g03552	249	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Car04g03552	249	MobiDBLite	consensus disorder prediction	1	34	-	-
	Car04g03552	249	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Car04g03552	249	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g03552	Car-Chr4	64656548	64657912	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Car04g03552		AP2	7.8e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g03552	04	64656548	64657912	Car04g03552	04	64656548	64657912	ECH