LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g03547	ATGTATCCGAACCAAGCCTTTTCGTCGGGATCTTACGCCGAAATGATGTCTGCAAATACTTTGTTACCTCATAACTATAATGAATCTGTAGGAGGACAAAATGAGTTGAAGTTTATCTCATCTATCGGCGACACAATGACTATGCAGCCTATCGATCATTCGACGAGCGATCCATCGCGCAACTCGTATGCTAGTGCTGAAGATTCTCATGTTATTTCAAGGACACAATTTGGACTTGTTGAGAGTGACCAAAATGTACAATGTCAAGGTTTGTCTCTTAGTCTTGGGACAATGATGCCTTCTATTGCTTCTGTACCCGCCTTTCAATATCAGTATCCCGGCAACGGTTTCTCTGCGCTGTTGAGTGCTCAGATTCCAAATTTAAAGGGTTCTTCATCTCTTAAAGATGATGAGGCTGAGTGCATGGCATCTTTGTCGTCTGGAGGATTTCACAACACTGTCAAAAGGGAGGGTTTGTATACAATAGGCCTTAATGAAGGCCAATCTGATCCGTGCCTTCATGGATCATCAAGTATTCCGAACAATGTGCTTAACTCTCATTACGTTAAGGCGGCTCAGGAATTGCTTGATGAAATAGTTAATGTCCGAAAAGCGTTGAAACAATCTGGATTTGAAAAACAACAAAGTTTGCGTGACACTGGTTTGGACGGTTCCAAAGATTCTGATGGAAAATCGACCAGTCAATCTATGCAAATATCTTCCGGCCCTAATGGTTCTAATGCAAATAACTCTTCATCCGAGCTATCACCTGCGGAACGACAGCTTTTGTTGGACAAGAAAACAAAACTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACCGACAATATTGCcatcagatgcaaattgtggtgtcatcatttgacatggttgcTGGATGTGGAGCAGCTGAACCATACACTGCTCTTGCTTTGCGAACAATTTCTCGTCACTTTCGCTGTTTGCGCGATGCTATCAGCGGCCAAATTCAAGCTACTCAAAGAAGCCTTGGAGAACAAGAGGGAATACCCCGTCTCCGCTATGTCGATCAACAACTTAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGGCCTCAAAGGGGACTTCCTGAAAGCTCTGTTTCCATACTCCGTGCATGGCTCTTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGTTGGCAAGACAAACAGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATCAATGCGAGGGTGCGTCTTTGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTCGGTGATTCTGAATCAAGCAGCAACCTCTTATCAGAAAACACGCCAAAAGCTCCAAGAGACGATGTTCAAGTGTCGGATAATAAAAGGGAAGAGTCGCAGGACAAGTTAGTAACTGTTGATGGTGTTCAAAGTAGTGATCATTGGACAAATGTCATGGACTCTAGAATTGAGAAAATGCAGGGTGACCAAAGGTTTAACATGAACAATAGTCCTTATTCAAATGCACCTATCTCAATCAACCAAAATGCTGATAACTGCATAATGGATTCTACTCCTACCACTTATGATGATTTATCAGAGTTGGGAAATTTTGCTGTTGGTGGCCATGTCTCACTTGCATTGGAGTTGAGGAACTCCGAAAGTGATGGATTTGGTGTGTCCAACGACGACGCCAATAAAAGACGCAACCAAGCATTGGCTTCTTCCCCGGATACTGATTTGCTAGATTATCATTTCGCAGACACAGGAAAGCAACAACACAAGTTCGGCAACACTCATTTATTACATGAGTTTGTTGTCTGA	1839	0.4171	MYPNQAFSSGSYAEMMSANTLLPHNYNESVGGQNELKFISSIGDTMTMQPIDHSTSDPSRNSYASAEDSHVISRTQFGLVESDQNVQCQGLSLSLGTMMPSIASVPAFQYQYPGNGFSALLSAQIPNLKGSSSLKDDEAECMASLSSGGFHNTVKREGLYTIGLNEGQSDPCLHGSSSIPNNVLNSHYVKAAQELLDEIVNVRKALKQSGFEKQQSLRDTGLDGSKDSDGKSTSQSMQISSGPNGSNANNSSSELSPAERQLLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQATQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSESSSNLLSENTPKAPRDDVQVSDNKREESQDKLVTVDGVQSSDHWTNVMDSRIEKMQGDQRFNMNNSPYSNAPISINQNADNCIMDSTPTTYDDLSELGNFAVGGHVSLALELRNSESDGFGVSNDDANKRRNQALASSPDTDLLDYHFADTGKQQHKFGNTHLLHEFVV	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g03547	612	Pfam	Associated with HOX	183	327	IPR006563	-
	Car04g03547	612	ProSiteProfiles	'Homeobox' domain profile.	366	429	IPR001356	GO:0003677
	Car04g03547	612	CDD	homeodomain	369	430	IPR001356	GO:0003677
	Car04g03547	612	SMART	HOX_1	369	433	IPR001356	GO:0003677
	Car04g03547	612	MobiDBLite	consensus disorder prediction	458	474	-	-
	Car04g03547	612	MobiDBLite	consensus disorder prediction	441	457	-	-
	Car04g03547	612	Gene3D	-	366	444	-	-
	Car04g03547	612	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	28	573	-	-
	Car04g03547	612	MobiDBLite	consensus disorder prediction	438	474	-	-
	Car04g03547	612	MobiDBLite	consensus disorder prediction	48	67	-	-
	Car04g03547	612	Pfam	Homeobox KN domain	386	425	IPR008422	GO:0003677\|GO:0006355
	Car04g03547	612	SUPERFAMILY	Homeodomain-like	370	437	IPR009057	-
	Car04g03547	612	SMART	prehox3	177	328	IPR006563	-
	Car04g03547	612	PANTHER	BEL1-LIKE HOMEODOMAIN PROTEIN 10	28	573	-	-
	Car04g03547	612	MobiDBLite	consensus disorder prediction	213	257	-	-
	Car04g03547	612	Coils	Coil	189	209	-	-
	Car04g03547	612	MobiDBLite	consensus disorder prediction	227	257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g03547	Car-Chr4	64619106	64622777	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Car04g03547		POX	1.9e-50	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g03547	04	64619106	64622777	Car04g03547	04	64619106	64622777	ECH
	Car05g03232	05	77072644	77075962	Car04g03547	04	64619106	64622777	PCT