Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03546 ATGAGAACATGCGCATGCCTTCACGCTTCTCTTATTCTTCACTCATCGCTTCAATTTCAATTTCAACAACAACGCTATCGTCATTATCTAAATCTTCCTTCATTCTCCCCTATTCGCTCTCTATTCCTCTCTCACACTCCAACCACCTCTCTCAATGTTATACCGCGCGATATTGAAGTTGAATTATCATCCTCCGACTCAAACGACGTCGTTTTATCTATAAACGAAAACCCTACAATTGAGCCACACAGCGAACTTGAACAAGTTCCTCCCTCCAATGAAGTTAAATCCACTAAACACAAAAAGAAGAAAGAACAAAACGACGACAACAGCACCAACTTGGATAACCGTTTCAAGCTCCGCAACGGAAAACAGGTTTTTGAAGAGAAAGCGTATCTCGTTGGTGTTGAACGAAAAGGTGATGTTAGGGATTCTTTTGGTATAGAGGAATCTTTGAGTGAATTGGAACAGTTAGCTGATACTGCTGGATTATTGGTTGTTGGTTCTACATACCAGAAGCTTGCTTCTCCAAACCCTAAGACGTACATTGGCTCCGGCAAAGTTTCTGAAATTAAAAGTGCAATTAATGCATTGGATGTTGAAACTGTGATATTTGATGATGAGCTGTCAGCTGGGCAACTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTTAGAGTTTGCGATCGAACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACACACGAAGCATCTTTACAGGTTTCATTGGCACAAATGGAATACCAACTACCTCGTCTAACGAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGATAAGCGTATTTTGCGTAACCAAATTGGTGTTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAATACCGTAATAGGCGTATCTCAGTACCTGTGCCAGTGGTATCCTTGGTTGGTTACACGAATGCTGGTAAGAGTACGCTTTTGAATCAATTAACTGGAGCAGATGTTCTTGCCGAAGATAAATTATTTGCAACTTTAGATCCAACTACGAGGAGAGTACAGATGAAGAATGGAAAAGAGTTCCTCCTAACAGACACCGTTGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCTGCCTTCAGAGCCACCCTGGAGGAGATATCAGAGTCATCACTTATGGTGCATGTGGTTGATATCAGTCACCCCCTGGCTGAGCAACAGATAAATGCCGTGGAAAAAGTTCTATCAGAACTAGATGTATCATCAATTCCAAGACTGATGGTCTGGAACAAGATTGATAATGCTAGTGATCCCCAGAAAATAAGGCTTGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTTTAAGTGGCGATGGCTTACCGGAATTCTGTAATGCAGTTCAAGACCAACTAAAGGACTCCATGGTGTGGGTGGAAGCTTTGTTACCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGGTCGAGAAAACTGCTCACCCTGCAGGCTTCAACTTTGGCTGGGGTGGTCATCATGGTGGAACAACTAGAGGAATGTCTTTTGGTCTTTCTCCTCAATTCTATCAGTTTTCATGCCCTCAAGCTAATGACATTGTCATGTCAGTGTTGGAGAAGGCTATTGCTAAGGATATCAGAACAGCAGCTTCTCTTCTTAGACTTCACTTCCACGATTGCTTCGTGCAGggctgcgatgcatcgattttgttggatgatagcgcggcaatagccagcgaaaaaaatggcgggccgaacaaaaattcggtccgaggttttgaagtgattgacaagatcaaatctaaattggaacaagcatgtcctcagacagtctcatgtgcagacattgttgcccttgctgctaggggatccactgttcttagtggaggacccaattgggagctaccattaggaaggagagactcaaaaacagcaagcctaaggggctcaaacaaaaacattcccccaccaaatgccaccattgaaggtctcctaacatttttcaaacgtcaaggccttgatgaagtagaccttgttgccctctcagGTGCACATACAATTGGTGTGGCAAAATGTGCAACATTCAAGCAAAGACTATACAACCAAAATGGAAACAACCAACCAGATGAGAATCTAGACAAATCATTTTACTTTGATTTGAAAACAGTGTGCCCAAAATCAGGTGGTGACAACAAGATTTCTCCCTTGGACTTTGGTTCCCCAAGAATGTTCGATAATACTTATTACAAACTCTTACTTAGGGGAAAAGGTTTGCTTAATTCAGATGAAGTGCTTCTCACAGGAAGTGTTAAGGAGACTCATGAACTAGTGAAGAAATATGCACAGGATGAAAGTCTCTTCTTTGAGCAATTTGCTTTGTCTATGATCAAGTTGGGAAATCTTCGTCCTCTCACTGGATTTAATGAAGAGTTTGTTCTCCGATTTTGGTTCATCGTTCACATAATGAAAGTAAAAGTTATATCACGTTCTACCGATGAGTTCACTCGAGAAAGAAGCCAAGACCTTCAACGCGTATTTCGTAATTACGACCCTAGTCTTCGTCCTCAAGAGAAGGCAGTGGAATATGTTCGTGCTGTTAATGCTGTGAAGTTAGACAAGatttttGCAAGACCTTTTATAGGAGCAATGGATGGACATGTAGATGCTATTTCATGTATGGCTAAGAACCCTAGTCAGTTGAAACACATATTCTCTGGTTCAATGGATGGAGATATTCGTCTCTGGGATATAGCTGCTAGACGGACCATTTGTCAGTTCCCGGGTCACCAAGGTGCTGTGCGAGGCCTGACAACATCTACAGATGGCCGCATTCTTGTTTCATGTGGAACTGATAGCACTGTCAGACTGTGGAGTATTCCTGTTCCTTCTTTTGCAGATTCAGATGGCTCAATTCAGAACACTATTGAGCCAACAAGTGTTTATGTATGGAAGAATGCATTTTGTGCTGCTGATCACCAGTGGGACGGCGAACATTTCGCTACAGGTGGCGCTCAAGTAGATATATGGAATCATAACAGGTCTCAGCCAGTAAATAGTTTTGTATGGGGTACAGATACGGTGATTTCTGTCCGCTTTAATCCAGGAGAACCAAATCTATTGGCAAGCTCAGCTAGTGACAGGAGTATAAATCTTTATGATTTACGCATGGATACTCCAGTAAGGAAAATGATAATGATGACCAAAACCAATTCTATAGCTTGGAATCCAATGGAGCCCATAAATTTTACAGTTGCAAATGAAGATGGTCACTGCTATAGTTATGATTCTAGGAAGTTGGGTGAAGCCAAATGTGTTCATAAAGATCACGTTTCTGCCGTCATGGATATTGACTACTCACCAACTGGTCGTGAATTTGTTACCGGATCTTATGATAGAACAGTGAGAATATTCCCTTATAATGGCGGTCACAGCCGAGAGATTTATCATACTAAAAGAATGCAAAGGGTATTCTGCGTGAAATTCAGCGGTGATGGAAGTTATTTGATTTCGGGAAGTGATGATACTAACCTCAGGCTTTGGAAGGCCAAAGCCTCGGAACAACTTGGAGTGATTCTCCCAAGGGAAAAGAAGAAGCATGAATATCACGAGGCAATAAAGAAACGCTACAGGCACCTTCCCGAAATTAGCCGTATCGCAAGGCATAGACACTTACCAAGACCGATATACAAAGCCGCTTCTTTGATGCGTGTTATGACTGATGCGAAGAAAAGAAAGGAAGAGAGGAGGAAAGCTCACAGTGCTCCAGGGAGTGTTACTACAAAGCCATTACGAAAAAGAAGAATTATCAGAGAAGTTGAATGA 3894 0.378 MRTCACLHASLILHSSLQFQFQQQRYRHYLNLPSFSPIRSLFLSHTPTTSLNVIPRDIEVELSSSDSNDVVLSINENPTIEPHSELEQVPPSNEVKSTKHKKKKEQNDDNSTNLDNRFKLRNGKQVFEEKAYLVGVERKGDVRDSFGIEESLSELEQLADTAGLLVVGSTYQKLASPNPKTYIGSGKVSEIKSAINALDVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQSGGQVKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRNRRISVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLMVHVVDISHPLAEQQINAVEKVLSELDVSSIPRLMVWNKIDNASDPQKIRLEAEKRDDVVCISALSGDGLPEFCNAVQDQLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTAHPAGFNFGWGGHHGGTTRGMSFGLSPQFYQFSCPQANDIVMSVLEKAIAKDIRTAASLLRLHFHDCFVQGCDASILLDDSAAIASEKNGGPNKNSVRGFEVIDKIKSKLEQACPQTVSCADIVALAARGSTVLSGGPNWELPLGRRDSKTASLRGSNKNIPPPNATIEGLLTFFKRQGLDEVDLVALSGAHTIGVAKCATFKQRLYNQNGNNQPDENLDKSFYFDLKTVCPKSGGDNKISPLDFGSPRMFDNTYYKLLLRGKGLLNSDEVLLTGSVKETHELVKKYAQDESLFFEQFALSMIKLGNLRPLTGFNEEFVLRFWFIVHIMKVKVISRSTDEFTRERSQDLQRVFRNYDPSLRPQEKAVEYVRAVNAVKLDKIFARPFIGAMDGHVDAISCMAKNPSQLKHIFSGSMDGDIRLWDIAARRTICQFPGHQGAVRGLTTSTDGRILVSCGTDSTVRLWSIPVPSFADSDGSIQNTIEPTSVYVWKNAFCAADHQWDGEHFATGGAQVDIWNHNRSQPVNSFVWGTDTVISVRFNPGEPNLLASSASDRSINLYDLRMDTPVRKMIMMTKTNSIAWNPMEPINFTVANEDGHCYSYDSRKLGEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSGDGSYLISGSDDTNLRLWKAKASEQLGVILPREKKKHEYHEAIKKRYRHLPEISRIARHRHLPRPIYKAASLMRVMTDAKKRKEERRKAHSAPGSVTTKPLRKRRIIREVE 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03546 1297 ProSitePatterns Trp-Asp (WD) repeats signature. 927 941 IPR019775 -
Car04g03546 1297 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 324 490 IPR030394 GO:0005525
Car04g03546 1297 MobiDBLite consensus disorder prediction 1266 1297 - -
Car04g03546 1297 PRINTS Haem peroxidase superfamily signature 573 587 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Haem peroxidase superfamily signature 653 665 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Haem peroxidase superfamily signature 761 776 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Haem peroxidase superfamily signature 635 652 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Haem peroxidase superfamily signature 701 716 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 Pfam GTP-binding GTPase N-terminal 149 238 IPR025121 -
Car04g03546 1297 PRINTS G protein beta WD-40 repeat signature 927 941 IPR020472 -
Car04g03546 1297 PRINTS G protein beta WD-40 repeat signature 969 983 IPR020472 -
Car04g03546 1297 PRINTS G protein beta WD-40 repeat signature 1192 1206 IPR020472 -
Car04g03546 1297 SUPERFAMILY Heme-dependent peroxidases 541 838 IPR010255 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 Coils Coil 297 317 - -
Car04g03546 1297 Gene3D - 872 986 IPR015943 GO:0005515
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 907 941 - -
Car04g03546 1297 TIGRFAM GTP_HflX: GTP-binding protein HflX 131 486 IPR016496 GO:0005525
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats profile. 950 983 IPR001680 GO:0005515
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1130 1161 - -
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 950 983 - -
Car04g03546 1297 PRINTS Plant peroxidase signature 575 595 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 817 830 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 634 644 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 775 792 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 615 628 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 759 774 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 700 712 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 653 668 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PRINTS Plant peroxidase signature 551 570 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 Gene3D Peroxidase, domain 2 679 823 - -
Car04g03546 1297 PANTHER NUCLEOTIDE BINDING 846 1297 - -
Car04g03546 1297 SMART WD40_4 943 982 IPR001680 GO:0005515
Car04g03546 1297 SMART WD40_4 1164 1205 IPR001680 GO:0005515
Car04g03546 1297 SMART WD40_4 1080 1119 IPR001680 GO:0005515
Car04g03546 1297 SMART WD40_4 900 940 IPR001680 GO:0005515
Car04g03546 1297 SMART WD40_4 1037 1077 IPR001680 GO:0005515
Car04g03546 1297 SMART WD40_4 1123 1162 IPR001680 GO:0005515
Car04g03546 1297 SUPERFAMILY WD40 repeat-like 903 1205 IPR036322 GO:0005515
Car04g03546 1297 CDD WD40 904 1205 - -
Car04g03546 1297 Pfam Sof1-like domain 1206 1292 IPR007287 -
Car04g03546 1297 MobiDBLite consensus disorder prediction 94 116 - -
Car04g03546 1297 Pfam GTP-binding GTPase Middle Region 241 318 IPR032305 -
Car04g03546 1297 Pfam WD domain, G-beta repeat 1176 1205 IPR001680 GO:0005515
Car04g03546 1297 Pfam WD domain, G-beta repeat 947 982 IPR001680 GO:0005515
Car04g03546 1297 Pfam WD domain, G-beta repeat 907 940 IPR001680 GO:0005515
Car04g03546 1297 Pfam WD domain, G-beta repeat 1127 1161 IPR001680 GO:0005515
Car04g03546 1297 Gene3D - 144 241 IPR042108 -
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats profile. 1173 1214 IPR001680 GO:0005515
Car04g03546 1297 ProSitePatterns Peroxidases proximal heme-ligand signature. 701 711 IPR019793 -
Car04g03546 1297 Gene3D - 323 491 IPR027417 -
Car04g03546 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 497 IPR027417 -
Car04g03546 1297 CDD HflX 283 486 IPR030394 GO:0005525
Car04g03546 1297 Gene3D - 989 1276 IPR015943 GO:0005515
Car04g03546 1297 Gene3D - 546 833 - -
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1173 1205 - -
Car04g03546 1297 Gene3D - 242 309 - -
Car04g03546 1297 Pfam 50S ribosome-binding GTPase 326 444 IPR006073 GO:0005525
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats profile. 907 949 IPR001680 GO:0005515
Car04g03546 1297 Hamap GTPase HflX [hflX]. 152 515 IPR016496 GO:0005525
Car04g03546 1297 ProSitePatterns Peroxidases active site signature. 573 584 IPR019794 GO:0004601
Car04g03546 1297 TIGRFAM small_GTP: small GTP-binding protein domain 326 475 IPR005225 GO:0005525
Car04g03546 1297 Pfam Peroxidase 560 807 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 PANTHER U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN 846 1297 - -
Car04g03546 1297 ProSiteProfiles Plant heme peroxidase family profile. 541 856 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g03546 1297 CDD secretory_peroxidase 541 830 IPR033905 GO:0004601|GO:0042744
Car04g03546 1297 MobiDBLite consensus disorder prediction 78 116 - -
Car04g03546 1297 ProSiteProfiles Trp-Asp (WD) repeats profile. 1130 1161 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03546 Car-Chr4 64592163 64608673 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03546 04 64592163 64608673 Car04g03546 04 64592163 64608673 ECH