Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03523 ATGTCATTGAAGAGTATTGTGAGAGAGATCAAGGAGATGGGAGAGGGAATTGGAAACATGTATAGAAGAGGAGTAGAATCCAAGCATATGCATAGACATGGAAAATCTCACATTGCACCTGAATGTtcatcaccattgtcactatcaacaacaacaacatcatcattatcaCAAAGCCAATGGGCTAATTTACCTCCTGAGTTGCTACTAGACATAATTCAAAGGGTGGAAGCTAGTGAAAACTCTTGGCCTTCTAGAAGAGCACTTGTAGCTTGTGCTTCAGTTTGTAGGTTGTGGAGAGAGATAACAAAGGGTGTGGTTAAGACACTTGAGCACTGTGGTTGCCTCACTTTTCCTATATCATTGAAGCAGCCTGGTCCAAGAAACAATCCTATCCAGTGTTTTATTAAAAGAGAAAGGGCTACTTCCACATATAGATTATATCTTGGTCTCAGCCCTGCTCTTTCTGGTGATATGAGTAAACTGCTCTTAGCAGCAAAGAAGATTAGAAGAGCAACATGTACAGAATTTTTAATATCATTGGTAGCTGATGATTTCTCTAGAGCTAGCAATACTTACATTGGAAAGTTGAGGTCTAATTTTCTAGGCACCAAGTTTATGATTTTCGACGGTCATCCTCCACAAGATTCTTCACTTCCATTGAGTTGTAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAGGGCTGCTACTGCTGCAAATCCTGCTAACTATAAAGTGGCAACTGTATCTTATGAACTCAACGTTCTTCGAACAAGAGGTCCGAGGCGAATGCGGTCTACAATGCACTTAATCCCCATATCTTCAGTCCAAGAAGGAGGAACTGCTCCCACTCCTTTGGAATTTACCAATTTCCATAATGAGCATGATGCATCTACTAGTCAAATTTCAAAGGAAAAGAAGCAAGAAGTTGTTGAAATTGGCTCAACTTGCACTGATTTTTCTAAAGAGCCACTGATATTGAAAAATAAAGCTCCTAGATGGCATGAACAGCTTCAATGTTGGTGCTTGAATTTCAAGGGACGCGTTACGGTCGCCTCAGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCATAACGTTTCGGCTGCGGAACAAGAGAAAGTTATATTACAATTTGGAAAAATTGGGAAGGACATATTCACGATGGATTATCGATATCCTCTCTCCGCATTTCAAGCTTTTGCAATCTGTTTGAGCAGCTTTGACACAAAACCAGCGTGTGAATGA 1263 0.3967 MSLKSIVREIKEMGEGIGNMYRRGVESKHMHRHGKSHIAPECSSPLSLSTTTTSSLSQSQWANLPPELLLDIIQRVEASENSWPSRRALVACASVCRLWREITKGVVKTLEHCGCLTFPISLKQPGPRNNPIQCFIKRERATSTYRLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRASNTYIGKLRSNFLGTKFMIFDGHPPQDSSLPLSCKLQQRVHLKQVLPRAATAANPANYKVATVSYELNVLRTRGPRRMRSTMHLIPISSVQEGGTAPTPLEFTNFHNEHDASTSQISKEKKQEVVEIGSTCTDFSKEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03523 420 PANTHER TUBBY-RELATED 1 420 - -
Car04g03523 420 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 420 - -
Car04g03523 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Car04g03523 420 SUPERFAMILY F-box domain 57 105 IPR036047 GO:0005515
Car04g03523 420 Gene3D - 54 106 - -
Car04g03523 420 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Car04g03523 420 PRINTS Tubby superfamily signature 177 193 IPR000007 -
Car04g03523 420 PRINTS Tubby superfamily signature 193 217 IPR000007 -
Car04g03523 420 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Car04g03523 420 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Car04g03523 420 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Car04g03523 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Car04g03523 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Car04g03523 420 Gene3D Tubby Protein; Chain A 119 420 IPR025659 -
Car04g03523 420 Pfam F-box domain 61 107 IPR001810 GO:0005515
Car04g03523 420 Pfam Tub family 122 415 IPR000007 -
Car04g03523 420 SUPERFAMILY Tubby C-terminal domain-like 111 420 IPR025659 -
Car04g03523 420 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03523 Car-Chr4 64399974 64402435 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car04g03523 Tub 3.8e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03523 04 64399974 64402435 Car04g03523 04 64399974 64402435 ECH