Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03482 ATGGGTAATCAACTTTGCAAAAGAGGAAAATTAAGATGGAAGAGAAAGCCAATGGGTTTTGTTCATCATCAAACTTTACCCTCTCACATTGGGATAAAAAGTGTGGATGTGGATAAGGCTTGTAACTTTTCTACCACTTCAAATCTATGTGTTTCCATAGTTACTTGGAATATGAATGGCCAGGTTTCTTTTGAAGATTTATCAGAGATGATTGGTAGCAACCGTGATTTTGACCTTCTAGCTGTTGGATTGCAAGAAGCTCCAGGAAACAAAGTTGCAACTATGCTTTCGGAAGCTTTGGATGAAAGTCACGTACTGATAGGTAAAGTTACCTTGCAGTCTTTGCAGTTGTACTTGTTTGGACCAAAGAATGCAGGGTCATTCATTCAAGAATTGAAAGTGGACAAACAATCTATTGGGGGATGTGGAGGAATAATTGGAAGAAAGAAAGGAGCTGTAGCAATTCGAATTAACTACAAAGGCATACGTTTACTGTTCATCTCATGCCACCTCTCTGAAAGAAATTATGAATGCAGGCATATATCGCACTCACTCTTCTCAAAAATTTGGAATCCATATTCTAGACCGTCTCATTTGACTGTTTGGTTAGGAGATCTAAACTATAGACTTCAAGGGATCCATACAAATCCCGCCAGGGACCTAATAGAGAAAAACCTTCATAAGAAGCTGCATGGCCATGATCAGCTCTTACAACAAGCTGAAGAAGGACAAATTTTCAATGGATTTTGTGAAGGAACATTGACATTCAAGCCAACATATAAGTATAATAAAGGAACTAGCAATTATGATACAAGTTATAAGGTTCGAGTACCAGCATGGACAGATCGCATACTGTTCAAGATAGAAGACACAGACAACATTGAAGCAACACTACATTCGTACGAGTCGATGGATCAAATATACGAGAAACTTTATGTGTTTGGGTTTGGTTTAGCTTTTGTAGTCTCTCCTTCGTTCAGGAGAAGCAGAACCAAACAATTAACCTTTTATTTTTTATTTTTTATTATTATCACAATTCTCTCTTCAAATTGGGTTTTTTTTTGCTGCTTCTGCAATTTTTTTAAGAGGAAGGGACTATTATTGCATATAATTTTTAAAGGCTCAGACCATAAGGTTTCTGAAGGGCATTACTATAGAGATGATACAAGTTATTACTTGCCATCGACTTCAGGGGATGTTTGGACTGAGAACGAGAATGAAGATATAGATCATGCTATTGCATTGTCTCTTGTAGAAGAAAATCAGAAAGCGAAGAATGTAAAGGACCACAGAGCACAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTATATTTGGAGTCACCTCCAAAATACGGAAATGATAATATGTAtcaaccaattcaaccgattcaaccaattcagccgattcaaccgattcaaccaattcaGTACTTCCCGATGGGTTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGACGATACCTAAATTGCTTGAGTGCATTCTGGCATCCCGAATGTTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTACCATAAAACATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACCAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGAACCAGCATTATTGCCCTTCTCATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGAGAATGGAGCCACATGGGACAGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATTATGGATACTTATGAATGCCAGCCCCTTAATGCTGATATACAAAAGTTCTATGAAAGCCTAAATATGAAACTGGATCAGCAAGTTCCACTATTGTTGGTTGAAAGACAAGCACTGAACGAAGCAAGGGAGGGAGAGAAGAATGGCCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTATATCGAGACGACCTAGACTTGGGACAGGAAATAGAACGATAGACAGGACAACACAGCCATACAAACTGACCGCGCGCTGTGATGTGACAGCAATTCTCATTCTATACGGTCTTCCAAGGTTGCTTACCGGATCGATTCTAGCACATGAGATGATGCATGCATGGCTGCGGCTAACAGGTTTTCGGACTCTAAGTCCAGAGGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAGCTTTCTTCTGCATCAGGCAGCAATTTTGTATCAGCCTCATCGTCATCTGCATCATATACATCTAAGAAAGGTAAAAGGCCACCTTTTGAGAGGAAGCTCGGGGAGTTTTTCAAGCACCAGATTGAATCAGACATTTCCCCGGTTTATGGAGATGGATTTAGGGCAGAGATAAAGCCTGGCTTGTTGTTATTAGAAACGGAGGCTAAGGACTTAATAATTTCAGGACTTAATAATAATAATAATCAGAAAACAGGAGACCATTCTGGAAAAGGAATAATGATTGGTATAAACAAATGCAAGgctagactcagttTAACTAGCTGCAATGCACATGCTTTCCTACAGCTTCCAATAAGGGTAATAGAATCTTTGCCAGTGATCAATTCCAACAGCACCACTCCAAAGGCATAG 2721 0.391 MGNQLCKRGKLRWKRKPMGFVHHQTLPSHIGIKSVDVDKACNFSTTSNLCVSIVTWNMNGQVSFEDLSEMIGSNRDFDLLAVGLQEAPGNKVATMLSEALDESHVLIGKVTLQSLQLYLFGPKNAGSFIQELKVDKQSIGGCGGIIGRKKGAVAIRINYKGIRLLFISCHLSERNYECRHISHSLFSKIWNPYSRPSHLTVWLGDLNYRLQGIHTNPARDLIEKNLHKKLHGHDQLLQQAEEGQIFNGFCEGTLTFKPTYKYNKGTSNYDTSYKVRVPAWTDRILFKIEDTDNIEATLHSYESMDQIYEKLYVFGFGLAFVVSPSFRRSRTKQLTFYFLFFIIITILSSNWVFFCCFCNFFKRKGLLLHIIFKGSDHKVSEGHYYRDDTSYYLPSTSGDVWTENENEDIDHAIALSLVEENQKAKNVKDHRAQLEEDEQLARAIEESLYLESPPKYGNDNMYQPIQPIQPIQPIQPIQPIQYFPMGYRICAGCNTEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKTCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPHGTGYIAHKDGRKLCLECLDSAIMDTYECQPLNADIQKFYESLNMKLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNRTIDRTTQPYKLTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSPEVEEGICQVLAHMWLESELSSASGSNFVSASSSSASYTSKKGKRPPFERKLGEFFKHQIESDISPVYGDGFRAEIKPGLLLLETEAKDLIISGLNNNNNQKTGDHSGKGIMIGINKCKARLSLTSCNAHAFLQLPIRVIESLPVINSNSTTPKA 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03482 906 ProSiteProfiles LIM domain profile. 488 548 IPR001781 -
Car04g03482 906 SMART i5p_5 47 318 IPR000300 GO:0016791|GO:0046856
Car04g03482 906 Pfam Protein DA1 640 825 IPR022087 -
Car04g03482 906 Pfam Endonuclease/Exonuclease/phosphatase family 54 287 IPR005135 GO:0003824
Car04g03482 906 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 516 577 - -
Car04g03482 906 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 483 515 - -
Car04g03482 906 CDD LIM 517 581 - -
Car04g03482 906 Coils Coil 417 447 - -
Car04g03482 906 Pfam LIM domain 490 544 IPR001781 -
Car04g03482 906 PANTHER PROTEIN DA1-LIKE 369 826 - -
Car04g03482 906 Gene3D Endonuclease/exonuclease/phosphatase 31 309 IPR036691 -
Car04g03482 906 ProSitePatterns LIM zinc-binding domain signature. 490 524 IPR001781 -
Car04g03482 906 CDD LIM_DA1 490 542 - -
Car04g03482 906 SMART lim_4 489 541 IPR001781 -
Car04g03482 906 Gene3D Cysteine Rich Protein 484 548 - -
Car04g03482 906 PANTHER PROTEIN DA1-RELATED 2 369 826 IPR045218 -
Car04g03482 906 SUPERFAMILY DNase I-like 41 305 IPR036691 -
Car04g03482 906 SMART uim 404 423 IPR003903 -
Car04g03482 906 SMART uim 435 454 IPR003903 -
Car04g03482 906 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 435 448 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03482 Car-Chr4 63935070 63947646 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g03482 Exo_endo_phos 2.4e-06 CL0530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03482 04 63935070 63947646 Car04g03482 04 63935070 63947646 ECH